Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HBQ1 (hemoglobin subunit theta 1)

Identity

Alias_nameshemoglobin, theta 1
Alias_symbol (synonym)HBQ
Other alias
HGNC (Hugo) HBQ1
LocusID (NCBI) 3049
Atlas_Id 64188
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 180334 and ends at 181179 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HBQ1   4833
Cards
Entrez_Gene (NCBI)HBQ1  3049  hemoglobin subunit theta 1
AliasesHBQ
GeneCards (Weizmann)HBQ1
Ensembl hg19 (Hinxton)ENSG00000086506 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000086506 [Gene_View]  chr16:180334-181179 [Contig_View]  HBQ1 [Vega]
ICGC DataPortalENSG00000086506
TCGA cBioPortalHBQ1
AceView (NCBI)HBQ1
Genatlas (Paris)HBQ1
WikiGenes3049
SOURCE (Princeton)HBQ1
Genetics Home Reference (NIH)HBQ1
Genomic and cartography
GoldenPath hg38 (UCSC)HBQ1  -     chr16:180334-181179 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HBQ1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblHBQ1 - 16p13.3 [CytoView hg19]  HBQ1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIHBQ1 [Mapview hg19]  HBQ1 [Mapview hg38]
OMIM142240   
Gene and transcription
Genbank (Entrez)BC056686
RefSeq transcript (Entrez)NM_005331
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HBQ1
Cluster EST : UnigeneHs.247921 [ NCBI ]
CGAP (NCI)Hs.247921
Alternative Splicing GalleryENSG00000086506
Gene ExpressionHBQ1 [ NCBI-GEO ]   HBQ1 [ EBI - ARRAY_EXPRESS ]   HBQ1 [ SEEK ]   HBQ1 [ MEM ]
Gene Expression Viewer (FireBrowse)HBQ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3049
GTEX Portal (Tissue expression)HBQ1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09105   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09105  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09105
Splice isoforms : SwissVarP09105
PhosPhoSitePlusP09105
Domaine pattern : Prosite (Expaxy)GLOBIN (PS01033)   
Domains : Interpro (EBI)Globin    Globin-like    Globin/Proto    Haemoglobin_a-typ    Haemoglobin_pi   
Domain families : Pfam (Sanger)Globin (PF00042)   
Domain families : Pfam (NCBI)pfam00042   
Conserved Domain (NCBI)HBQ1
DMDM Disease mutations3049
Blocks (Seattle)HBQ1
SuperfamilyP09105
Human Protein AtlasENSG00000086506
Peptide AtlasP09105
HPRD00791
IPIIPI00217472   
Protein Interaction databases
DIP (DOE-UCLA)P09105
IntAct (EBI)P09105
FunCoupENSG00000086506
BioGRIDHBQ1
STRING (EMBL)HBQ1
ZODIACHBQ1
Ontologies - Pathways
QuickGOP09105
Ontology : AmiGOoxygen transporter activity  iron ion binding  protein binding  hemoglobin complex  oxygen transport  oxygen binding  heme binding  
Ontology : EGO-EBIoxygen transporter activity  iron ion binding  protein binding  hemoglobin complex  oxygen transport  oxygen binding  heme binding  
NDEx NetworkHBQ1
Atlas of Cancer Signalling NetworkHBQ1
Wikipedia pathwaysHBQ1
Orthology - Evolution
OrthoDB3049
GeneTree (enSembl)ENSG00000086506
Phylogenetic Trees/Animal Genes : TreeFamHBQ1
HOVERGENP09105
HOGENOMP09105
Homologs : HomoloGeneHBQ1
Homology/Alignments : Family Browser (UCSC)HBQ1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHBQ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HBQ1
dbVarHBQ1
ClinVarHBQ1
1000_GenomesHBQ1 
Exome Variant ServerHBQ1
ExAC (Exome Aggregation Consortium)HBQ1 (select the gene name)
Genetic variants : HAPMAP3049
Genomic Variants (DGV)HBQ1 [DGVbeta]
DECIPHERHBQ1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHBQ1 
Mutations
ICGC Data PortalHBQ1 
TCGA Data PortalHBQ1 
Broad Tumor PortalHBQ1
OASIS PortalHBQ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHBQ1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHBQ1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HBQ1
DgiDB (Drug Gene Interaction Database)HBQ1
DoCM (Curated mutations)HBQ1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HBQ1 (select a term)
intoGenHBQ1
Cancer3DHBQ1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142240   
Orphanet
MedgenHBQ1
Genetic Testing Registry HBQ1
NextProtP09105 [Medical]
TSGene3049
GENETestsHBQ1
Target ValidationHBQ1
Huge Navigator HBQ1 [HugePedia]
snp3D : Map Gene to Disease3049
BioCentury BCIQHBQ1
ClinGenHBQ1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3049
Chemical/Pharm GKB GenePA29208
Clinical trialHBQ1
Miscellaneous
canSAR (ICR)HBQ1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHBQ1
EVEXHBQ1
GoPubMedHBQ1
iHOPHBQ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:52:02 CEST 2017

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