Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HBZ (hemoglobin subunit zeta)

Identity

Alias (NCBI)HBAZ
HBZ-T1
HBZ1
HGNC (Hugo) HBZ
HGNC Alias symbHBZ1
HBZ-T1
HGNC Previous namehemoglobin, zeta
LocusID (NCBI) 3050
Atlas_Id 64190
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 152855 and ends at 154505 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HBZ   4835
Cards
Entrez_Gene (NCBI)HBZ    hemoglobin subunit zeta
AliasesHBAZ; HBZ-T1; HBZ1
GeneCards (Weizmann)HBZ
Ensembl hg19 (Hinxton)ENSG00000130656 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130656 [Gene_View]  ENSG00000130656 [Sequence]  chr16:152855-154505 [Contig_View]  HBZ [Vega]
ICGC DataPortalENSG00000130656
TCGA cBioPortalHBZ
AceView (NCBI)HBZ
Genatlas (Paris)HBZ
SOURCE (Princeton)HBZ
Genetics Home Reference (NIH)HBZ
Genomic and cartography
GoldenPath hg38 (UCSC)HBZ  -     chr16:152855-154505 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HBZ  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathHBZ - 16p13.3 [CytoView hg19]  HBZ - 16p13.3 [CytoView hg38]
ImmunoBaseENSG00000130656
genome Data Viewer NCBIHBZ [Mapview hg19]  
OMIM142310   
Gene and transcription
Genbank (Entrez)BC027892 CR456848 M24173
RefSeq transcript (Entrez)NM_005332
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HBZ
Alternative Splicing GalleryENSG00000130656
Gene ExpressionHBZ [ NCBI-GEO ]   HBZ [ EBI - ARRAY_EXPRESS ]   HBZ [ SEEK ]   HBZ [ MEM ]
Gene Expression Viewer (FireBrowse)HBZ [ Firebrowse - Broad ]
GenevisibleExpression of HBZ in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3050
GTEX Portal (Tissue expression)HBZ
Human Protein AtlasENSG00000130656-HBZ [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP02008   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP02008  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP02008
Splice isoforms : SwissVarP02008
PhosPhoSitePlusP02008
Domaine pattern : Prosite (Expaxy)GLOBIN (PS01033)   
Domains : Interpro (EBI)Globin    Globin-like_sf    Globin/Proto    Haemoglobin_a-typ    Haemoglobin_zeta   
Domain families : Pfam (Sanger)Globin (PF00042)   
Domain families : Pfam (NCBI)pfam00042   
Conserved Domain (NCBI)HBZ
Blocks (Seattle)HBZ
PDB (RSDB)1JEB    3W4U   
PDB Europe1JEB    3W4U   
PDB (PDBSum)1JEB    3W4U   
PDB (IMB)1JEB    3W4U   
Structural Biology KnowledgeBase1JEB    3W4U   
SCOP (Structural Classification of Proteins)1JEB    3W4U   
CATH (Classification of proteins structures)1JEB    3W4U   
SuperfamilyP02008
Human Protein Atlas [tissue]ENSG00000130656-HBZ [tissue]
Peptide AtlasP02008
HPRD00794
IPIIPI00217473   
Protein Interaction databases
DIP (DOE-UCLA)P02008
IntAct (EBI)P02008
BioGRIDHBZ
STRING (EMBL)HBZ
ZODIACHBZ
Ontologies - Pathways
QuickGOP02008
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  peroxidase activity  oxygen carrier activity  iron ion binding  protein binding  hemoglobin complex  oxygen transport  oxygen binding  heme binding  haptoglobin binding  haptoglobin-hemoglobin complex  hydrogen peroxide catabolic process  organic acid binding  erythrocyte maturation  extracellular exosome  cellular oxidant detoxification  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  peroxidase activity  oxygen carrier activity  iron ion binding  protein binding  hemoglobin complex  oxygen transport  oxygen binding  heme binding  haptoglobin binding  haptoglobin-hemoglobin complex  hydrogen peroxide catabolic process  organic acid binding  erythrocyte maturation  extracellular exosome  cellular oxidant detoxification  
NDEx NetworkHBZ
Atlas of Cancer Signalling NetworkHBZ
Wikipedia pathwaysHBZ
Orthology - Evolution
OrthoDB3050
GeneTree (enSembl)ENSG00000130656
Phylogenetic Trees/Animal Genes : TreeFamHBZ
HOGENOMP02008
Homologs : HomoloGeneHBZ
Homology/Alignments : Family Browser (UCSC)HBZ
Gene fusions - Rearrangements
Fusion : QuiverHBZ
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHBZ [hg38]
dbVarHBZ
ClinVarHBZ
MonarchHBZ
1000_GenomesHBZ 
Exome Variant ServerHBZ
GNOMAD BrowserENSG00000130656
Varsome BrowserHBZ
Genomic Variants (DGV)HBZ [DGVbeta]
DECIPHERHBZ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHBZ 
Mutations
ICGC Data PortalHBZ 
TCGA Data PortalHBZ 
Broad Tumor PortalHBZ
OASIS PortalHBZ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHBZ  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHBZ
Mutations and Diseases : HGMDHBZ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HBZ
DgiDB (Drug Gene Interaction Database)HBZ
DoCM (Curated mutations)HBZ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HBZ (select a term)
intoGenHBZ
Cancer3DHBZ(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142310   
Orphanet
DisGeNETHBZ
MedgenHBZ
Genetic Testing Registry HBZ
NextProtP02008 [Medical]
GENETestsHBZ
Target ValidationHBZ
Huge Navigator HBZ [HugePedia]
ClinGenHBZ
Clinical trials, drugs, therapy
MyCancerGenomeHBZ
Protein Interactions : CTD
Pharm GKB GenePA29212
Clinical trialHBZ
Miscellaneous
canSAR (ICR)HBZ (select the gene name)
HarmonizomeHBZ
DataMed IndexHBZ
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHBZ
EVEXHBZ
GoPubMedHBZ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:56:46 CET 2020
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