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HCAR1 (hydroxycarboxylic acid receptor 1)

Identity

Alias_namesGPR104
GPR81
G protein-coupled receptor 104
G protein-coupled receptor 81
Alias_symbol (synonym)HCA1
FKSG80
TA-GPCR
LACR1
Other aliasTAGPCR
HGNC (Hugo) HCAR1
LocusID (NCBI) 27198
Atlas_Id 54981
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 122727606 and ends at 122730582 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCAR1   4532
Cards
Entrez_Gene (NCBI)HCAR1  27198  hydroxycarboxylic acid receptor 1
AliasesFKSG80; GPR104; GPR81; HCA1; 
LACR1; TA-GPCR; TAGPCR
GeneCards (Weizmann)HCAR1
Ensembl hg19 (Hinxton)ENSG00000196917 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196917 [Gene_View]  chr12:122727606-122730582 [Contig_View]  HCAR1 [Vega]
ICGC DataPortalENSG00000196917
TCGA cBioPortalHCAR1
AceView (NCBI)HCAR1
Genatlas (Paris)HCAR1
WikiGenes27198
SOURCE (Princeton)HCAR1
Genetics Home Reference (NIH)HCAR1
Genomic and cartography
GoldenPath hg38 (UCSC)HCAR1  -     chr12:122727606-122730582 -  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCAR1  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblHCAR1 - 12q24.31 [CytoView hg19]  HCAR1 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIHCAR1 [Mapview hg19]  HCAR1 [Mapview hg38]
OMIM606923   
Gene and transcription
Genbank (Entrez)AF345568 AF385431 AF385432 AK122659 AK289557
RefSeq transcript (Entrez)NM_032554
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HCAR1
Cluster EST : UnigeneHs.711001 [ NCBI ]
CGAP (NCI)Hs.711001
Alternative Splicing GalleryENSG00000196917
Gene ExpressionHCAR1 [ NCBI-GEO ]   HCAR1 [ EBI - ARRAY_EXPRESS ]   HCAR1 [ SEEK ]   HCAR1 [ MEM ]
Gene Expression Viewer (FireBrowse)HCAR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27198
GTEX Portal (Tissue expression)HCAR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXC0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXC0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXC0
Splice isoforms : SwissVarQ9BXC0
PhosPhoSitePlusQ9BXC0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    HCAR1_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)HCAR1
DMDM Disease mutations27198
Blocks (Seattle)HCAR1
SuperfamilyQ9BXC0
Human Protein AtlasENSG00000196917
Peptide AtlasQ9BXC0
HPRD06083
IPIIPI00000211   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXC0
IntAct (EBI)Q9BXC0
FunCoupENSG00000196917
BioGRIDHCAR1
STRING (EMBL)HCAR1
ZODIACHCAR1
Ontologies - Pathways
QuickGOQ9BXC0
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
NDEx NetworkHCAR1
Atlas of Cancer Signalling NetworkHCAR1
Wikipedia pathwaysHCAR1
Orthology - Evolution
OrthoDB27198
GeneTree (enSembl)ENSG00000196917
Phylogenetic Trees/Animal Genes : TreeFamHCAR1
HOVERGENQ9BXC0
HOGENOMQ9BXC0
Homologs : HomoloGeneHCAR1
Homology/Alignments : Family Browser (UCSC)HCAR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHCAR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HCAR1
dbVarHCAR1
ClinVarHCAR1
1000_GenomesHCAR1 
Exome Variant ServerHCAR1
ExAC (Exome Aggregation Consortium)HCAR1 (select the gene name)
Genetic variants : HAPMAP27198
Genomic Variants (DGV)HCAR1 [DGVbeta]
DECIPHERHCAR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHCAR1 
Mutations
ICGC Data PortalHCAR1 
TCGA Data PortalHCAR1 
Broad Tumor PortalHCAR1
OASIS PortalHCAR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHCAR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHCAR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HCAR1
DgiDB (Drug Gene Interaction Database)HCAR1
DoCM (Curated mutations)HCAR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HCAR1 (select a term)
intoGenHCAR1
Cancer3DHCAR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606923   
Orphanet
MedgenHCAR1
Genetic Testing Registry HCAR1
NextProtQ9BXC0 [Medical]
TSGene27198
GENETestsHCAR1
Target ValidationHCAR1
Huge Navigator HCAR1 [HugePedia]
snp3D : Map Gene to Disease27198
BioCentury BCIQHCAR1
ClinGenHCAR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27198
Chemical/Pharm GKB GenePA28925
Clinical trialHCAR1
Miscellaneous
canSAR (ICR)HCAR1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCAR1
EVEXHCAR1
GoPubMedHCAR1
iHOPHCAR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:36:27 CEST 2017

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