Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HCCAT5 (hepatocellular carcinoma associated transcript 5 (non-protein coding))

Identity

Alias_symbol (synonym)HTA
FJ222407
Other alias
HGNC (Hugo) HCCAT5
LocusID (NCBI) 283902
Atlas_Id 53333
Location 16q22.3  [Link to chromosome band 16q22]
Location_base_pair Starts at 73126524 and ends at 73127672 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCCAT5   48612
Cards
Entrez_Gene (NCBI)HCCAT5  283902  hepatocellular carcinoma associated transcript 5 (non-protein coding)
AliasesFJ222407; HTA
GeneCards (Weizmann)HCCAT5
Ensembl hg19 (Hinxton)ENSG00000260880 [Gene_View]  chr16:73126524-73127672 [Contig_View]  HCCAT5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000260880 [Gene_View]  chr16:73126524-73127672 [Contig_View]  HCCAT5 [Vega]
ICGC DataPortalENSG00000260880
TCGA cBioPortalHCCAT5
AceView (NCBI)HCCAT5
Genatlas (Paris)HCCAT5
WikiGenes283902
SOURCE (Princeton)HCCAT5
Genetics Home Reference (NIH)HCCAT5
Genomic and cartography
GoldenPath hg19 (UCSC)HCCAT5  -     chr16:73126524-73127672 +  16q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HCCAT5  -     16q22.3   [Description]    (hg38-Dec_2013)
EnsemblHCCAT5 - 16q22.3 [CytoView hg19]  HCCAT5 - 16q22.3 [CytoView hg38]
Mapping of homologs : NCBIHCCAT5 [Mapview hg19]  HCCAT5 [Mapview hg38]
OMIM615613   
Gene and transcription
Genbank (Entrez)BC019009 FJ222407 FJ222408 HG508265
RefSeq transcript (Entrez)NM_001101347
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)HCCAT5
Cluster EST : UnigeneHs.382776 [ NCBI ]
CGAP (NCI)Hs.382776
Alternative Splicing GalleryENSG00000260880
Gene ExpressionHCCAT5 [ NCBI-GEO ]   HCCAT5 [ EBI - ARRAY_EXPRESS ]   HCCAT5 [ SEEK ]   HCCAT5 [ MEM ]
Gene Expression Viewer (FireBrowse)HCCAT5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)283902
GTEX Portal (Tissue expression)HCCAT5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HCCAT5
DMDM Disease mutations283902
Blocks (Seattle)HCCAT5
Human Protein AtlasENSG00000260880
IPIIPI00867559   
Protein Interaction databases
FunCoupENSG00000260880
BioGRIDHCCAT5
STRING (EMBL)HCCAT5
ZODIACHCCAT5
Ontologies - Pathways
Huge Navigator HCCAT5 [HugePedia]
snp3D : Map Gene to Disease283902
BioCentury BCIQHCCAT5
ClinGenHCCAT5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283902
Clinical trialHCCAT5
Miscellaneous
canSAR (ICR)HCCAT5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCCAT5
EVEXHCCAT5
GoPubMedHCCAT5
iHOPHCCAT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:03:27 CEST 2017

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