Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HCCS (holocytochrome c synthase)

Identity

Other namesCCHL
MCOPS7
MLS
HGNC (Hugo) HCCS
LocusID (NCBI) 3052
Location Xp22.2
Location_base_pair Starts at 11129406 and ends at 11141204 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HCCS   4837
Cards
Entrez_Gene (NCBI)HCCS  3052  holocytochrome c synthase
GeneCards (Weizmann)HCCS
Ensembl hg19 (Hinxton)ENSG00000004961 [Gene_View]  chrX:11129406-11141204 [Contig_View]  HCCS [Vega]
Ensembl hg38 (Hinxton)ENSG00000004961 [Gene_View]  chrX:11129406-11141204 [Contig_View]  HCCS [Vega]
ICGC DataPortalENSG00000004961
cBioPortalHCCS
AceView (NCBI)HCCS
Genatlas (Paris)HCCS
WikiGenes3052
SOURCE (Princeton)HCCS
Genomic and cartography
GoldenPath hg19 (UCSC)HCCS  -     chrX:11129406-11141204 +  Xp22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HCCS  -     Xp22.2   [Description]    (hg38-Dec_2013)
EnsemblHCCS - Xp22.2 [CytoView hg19]  HCCS - Xp22.2 [CytoView hg38]
Mapping of homologs : NCBIHCCS [Mapview hg19]  HCCS [Mapview hg38]
OMIM300056   309801   
Gene and transcription
Genbank (Entrez)AI027533 AK097815 AU310864 BC001691 BC095455
RefSeq transcript (Entrez)NM_001122608 NM_001171991 NM_005333
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_016460 NT_167197 NW_001842360 NW_004929438
Consensus coding sequences : CCDS (NCBI)HCCS
Cluster EST : UnigeneHs.211571 [ NCBI ]
CGAP (NCI)Hs.211571
Alternative Splicing : Fast-db (Paris)GSHG0031373
Alternative Splicing GalleryENSG00000004961
Gene ExpressionHCCS [ NCBI-GEO ]     HCCS [ SEEK ]   HCCS [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP53701 (Uniprot)
NextProtP53701  [Medical]
With graphics : InterProP53701
Splice isoforms : SwissVarP53701 (Swissvar)
Catalytic activity : Enzyme4.4.1.17 [ Enzyme-Expasy ]   4.4.1.174.4.1.17 [ IntEnz-EBI ]   4.4.1.17 [ BRENDA ]   4.4.1.17 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)CYTO_HEME_LYASE_1 (PS00821)    CYTO_HEME_LYASE_2 (PS00822)   
Domains : Interpro (EBI)Cyt_C/C1_haem_lyase   
Related proteins : CluSTrP53701
Domain families : Pfam (Sanger)Cyto_heme_lyase (PF01265)   
Domain families : Pfam (NCBI)pfam01265   
DMDM Disease mutations3052
Blocks (Seattle)P53701
Human Protein AtlasENSG00000004961
Peptide AtlasP53701
HPRD02085
IPIIPI00023406   
Protein Interaction databases
DIP (DOE-UCLA)P53701
IntAct (EBI)P53701
FunCoupENSG00000004961
BioGRIDHCCS
IntegromeDBHCCS
STRING (EMBL)HCCS
Ontologies - Pathways
QuickGOP53701
Ontology : AmiGOholocytochrome-c synthase activity  mitochondrion  mitochondrial inner membrane  organ morphogenesis  metal ion binding  oxidation-reduction process  
Ontology : EGO-EBIholocytochrome-c synthase activity  mitochondrion  mitochondrial inner membrane  organ morphogenesis  metal ion binding  oxidation-reduction process  
Pathways : KEGGPorphyrin and chlorophyll metabolism   
Protein Interaction DatabaseHCCS
DoCM (Curated mutations)HCCS
Wikipedia pathwaysHCCS
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerHCCS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HCCS
dbVarHCCS
ClinVarHCCS
1000_GenomesHCCS 
Exome Variant ServerHCCS
SNP (GeneSNP Utah)HCCS
SNP : HGBaseHCCS
Genetic variants : HAPMAPHCCS
Genomic VariantsHCCS  HCCS [DGVbeta]
Mutations
ICGC Data PortalENSG00000004961 
Somatic Mutations in Cancer : COSMICHCCS 
CONAN: Copy Number AnalysisHCCS 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:11129406-11141204
Mutations and Diseases : HGMDHCCS
OMIM300056    309801   
MedgenHCCS
NextProtP53701 [Medical]
GENETestsHCCS
Disease Genetic AssociationHCCS
Huge Navigator HCCS [HugePedia]  HCCS [HugeCancerGEM]
snp3D : Map Gene to Disease3052
DGIdb (Drug Gene Interaction db)HCCS
General knowledge
Homologs : HomoloGeneHCCS
Homology/Alignments : Family Browser (UCSC)HCCS
Phylogenetic Trees/Animal Genes : TreeFamHCCS
Chemical/Protein Interactions : CTD3052
Chemical/Pharm GKB GenePA29214
Clinical trialHCCS
Cancer Resource (Charite)ENSG00000004961
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
CoreMineHCCS
GoPubMedHCCS
iHOPHCCS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 21:57:16 CET 2014

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