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HCFC1R1 (host cell factor C1 regulator 1)

Identity

Alias_nameshost cell factor C1 regulator 1 (XPO1 dependent)
Alias_symbol (synonym)HPIP
FLJ20568
Other alias
HGNC (Hugo) HCFC1R1
LocusID (NCBI) 54985
Atlas_Id 55592
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3022620 and ends at 3024286 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD63 (12q13.2) / HCFC1R1 (16p13.3)HECTD1 (14q12) / HCFC1R1 (16p13.3)MECP2 (Xq28) / HCFC1R1 (16p13.3)
PHRF1 (11p15.5) / HCFC1R1 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCFC1R1   21198
Cards
Entrez_Gene (NCBI)HCFC1R1  54985  host cell factor C1 regulator 1
AliasesHPIP
GeneCards (Weizmann)HCFC1R1
Ensembl hg19 (Hinxton)ENSG00000103145 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103145 [Gene_View]  chr16:3022620-3024286 [Contig_View]  HCFC1R1 [Vega]
ICGC DataPortalENSG00000103145
TCGA cBioPortalHCFC1R1
AceView (NCBI)HCFC1R1
Genatlas (Paris)HCFC1R1
WikiGenes54985
SOURCE (Princeton)HCFC1R1
Genetics Home Reference (NIH)HCFC1R1
Genomic and cartography
GoldenPath hg38 (UCSC)HCFC1R1  -     chr16:3022620-3024286 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCFC1R1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblHCFC1R1 - 16p13.3 [CytoView hg19]  HCFC1R1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIHCFC1R1 [Mapview hg19]  HCFC1R1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000575 AK293768 AY116892 BC064026 BC065514
RefSeq transcript (Entrez)NM_001002017 NM_001002018 NM_001288665 NM_001288666 NM_001288667 NM_001288668 NM_001308070 NM_017885
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HCFC1R1
Cluster EST : UnigeneHs.423103 [ NCBI ]
CGAP (NCI)Hs.423103
Alternative Splicing GalleryENSG00000103145
Gene ExpressionHCFC1R1 [ NCBI-GEO ]   HCFC1R1 [ EBI - ARRAY_EXPRESS ]   HCFC1R1 [ SEEK ]   HCFC1R1 [ MEM ]
Gene Expression Viewer (FireBrowse)HCFC1R1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54985
GTEX Portal (Tissue expression)HCFC1R1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWW0
Splice isoforms : SwissVarQ9NWW0
PhosPhoSitePlusQ9NWW0
Domains : Interpro (EBI)HCFC1R1   
Domain families : Pfam (Sanger)HPIP (PF15226)   
Domain families : Pfam (NCBI)pfam15226   
Conserved Domain (NCBI)HCFC1R1
DMDM Disease mutations54985
Blocks (Seattle)HCFC1R1
SuperfamilyQ9NWW0
Human Protein AtlasENSG00000103145
Peptide AtlasQ9NWW0
HPRD13636
IPIIPI00016599   IPI00470340   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWW0
IntAct (EBI)Q9NWW0
FunCoupENSG00000103145
BioGRIDHCFC1R1
STRING (EMBL)HCFC1R1
ZODIACHCFC1R1
Ontologies - Pathways
QuickGOQ9NWW0
Ontology : AmiGOnucleoplasm  cytoplasm  
Ontology : EGO-EBInucleoplasm  cytoplasm  
NDEx NetworkHCFC1R1
Atlas of Cancer Signalling NetworkHCFC1R1
Wikipedia pathwaysHCFC1R1
Orthology - Evolution
OrthoDB54985
GeneTree (enSembl)ENSG00000103145
Phylogenetic Trees/Animal Genes : TreeFamHCFC1R1
HOVERGENQ9NWW0
HOGENOMQ9NWW0
Homologs : HomoloGeneHCFC1R1
Homology/Alignments : Family Browser (UCSC)HCFC1R1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHCFC1R1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HCFC1R1
dbVarHCFC1R1
ClinVarHCFC1R1
1000_GenomesHCFC1R1 
Exome Variant ServerHCFC1R1
ExAC (Exome Aggregation Consortium)HCFC1R1 (select the gene name)
Genetic variants : HAPMAP54985
Genomic Variants (DGV)HCFC1R1 [DGVbeta]
DECIPHERHCFC1R1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHCFC1R1 
Mutations
ICGC Data PortalHCFC1R1 
TCGA Data PortalHCFC1R1 
Broad Tumor PortalHCFC1R1
OASIS PortalHCFC1R1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHCFC1R1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHCFC1R1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HCFC1R1
DgiDB (Drug Gene Interaction Database)HCFC1R1
DoCM (Curated mutations)HCFC1R1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HCFC1R1 (select a term)
intoGenHCFC1R1
Cancer3DHCFC1R1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHCFC1R1
Genetic Testing Registry HCFC1R1
NextProtQ9NWW0 [Medical]
TSGene54985
GENETestsHCFC1R1
Target ValidationHCFC1R1
Huge Navigator HCFC1R1 [HugePedia]
snp3D : Map Gene to Disease54985
BioCentury BCIQHCFC1R1
ClinGenHCFC1R1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54985
Chemical/Pharm GKB GenePA134951485
Clinical trialHCFC1R1
Miscellaneous
canSAR (ICR)HCFC1R1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCFC1R1
EVEXHCFC1R1
GoPubMedHCFC1R1
iHOPHCFC1R1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 17:02:47 CEST 2017

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