Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HCFC2 (host cell factor C2)

Identity

Alias_symbol (synonym)HCF-2
Other aliasHCF2
HGNC (Hugo) HCFC2
LocusID (NCBI) 29915
Atlas_Id 64194
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 104458236 and ends at 104500304 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHST11 (12q23.3) / HCFC2 (12q23.3)HCFC2 (12q23.3) / ANKS1B (12q23.1)MYOT (5q31.2) / HCFC2 (12q23.3)
TXNRD1 (12q23.3) / HCFC2 (12q23.3)CHST11 HCFC2TXNRD1 HCFC2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCFC2   24972
Cards
Entrez_Gene (NCBI)HCFC2  29915  host cell factor C2
AliasesHCF-2; HCF2
GeneCards (Weizmann)HCFC2
Ensembl hg19 (Hinxton)ENSG00000111727 [Gene_View]  chr12:104458236-104500304 [Contig_View]  HCFC2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000111727 [Gene_View]  chr12:104458236-104500304 [Contig_View]  HCFC2 [Vega]
ICGC DataPortalENSG00000111727
TCGA cBioPortalHCFC2
AceView (NCBI)HCFC2
Genatlas (Paris)HCFC2
WikiGenes29915
SOURCE (Princeton)HCFC2
Genetics Home Reference (NIH)HCFC2
Genomic and cartography
GoldenPath hg19 (UCSC)HCFC2  -     chr12:104458236-104500304 +  12q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HCFC2  -     12q23.3   [Description]    (hg38-Dec_2013)
EnsemblHCFC2 - 12q23.3 [CytoView hg19]  HCFC2 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBIHCFC2 [Mapview hg19]  HCFC2 [Mapview hg38]
OMIM607926   
Gene and transcription
Genbank (Entrez)AF117210 AI247087 AK223342 AK296523 AK313466
RefSeq transcript (Entrez)NM_013320
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)HCFC2
Cluster EST : UnigeneHs.506558 [ NCBI ]
CGAP (NCI)Hs.506558
Alternative Splicing GalleryENSG00000111727
Gene ExpressionHCFC2 [ NCBI-GEO ]   HCFC2 [ EBI - ARRAY_EXPRESS ]   HCFC2 [ SEEK ]   HCFC2 [ MEM ]
Gene Expression Viewer (FireBrowse)HCFC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29915
GTEX Portal (Tissue expression)HCFC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5Z7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5Z7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5Z7
Splice isoforms : SwissVarQ9Y5Z7
PhosPhoSitePlusQ9Y5Z7
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    Gal_Oxase/kelch_b-propeller    Gal_Oxidase_b-propeller    Ig-like_fold    Kelch-typ_b-propeller   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)FN3 (SM00060)  
Conserved Domain (NCBI)HCFC2
DMDM Disease mutations29915
Blocks (Seattle)HCFC2
SuperfamilyQ9Y5Z7
Human Protein AtlasENSG00000111727
Peptide AtlasQ9Y5Z7
HPRD06393
IPIIPI00002469   IPI00794497   IPI01022150   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5Z7
IntAct (EBI)Q9Y5Z7
FunCoupENSG00000111727
BioGRIDHCFC2
STRING (EMBL)HCFC2
ZODIACHCFC2
Ontologies - Pathways
QuickGOQ9Y5Z7
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcription coactivator activity  nucleus  nucleoplasm  cytoplasm  plasma membrane  regulation of transcription from RNA polymerase II promoter  viral process  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcription coactivator activity  nucleus  nucleoplasm  cytoplasm  plasma membrane  regulation of transcription from RNA polymerase II promoter  viral process  
Pathways : KEGGHerpes simplex infection   
NDEx NetworkHCFC2
Atlas of Cancer Signalling NetworkHCFC2
Wikipedia pathwaysHCFC2
Orthology - Evolution
OrthoDB29915
GeneTree (enSembl)ENSG00000111727
Phylogenetic Trees/Animal Genes : TreeFamHCFC2
HOVERGENQ9Y5Z7
HOGENOMQ9Y5Z7
Homologs : HomoloGeneHCFC2
Homology/Alignments : Family Browser (UCSC)HCFC2
Gene fusions - Rearrangements
Fusion: TCGACHST11 HCFC2
Fusion: TCGATXNRD1 HCFC2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHCFC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HCFC2
dbVarHCFC2
ClinVarHCFC2
1000_GenomesHCFC2 
Exome Variant ServerHCFC2
ExAC (Exome Aggregation Consortium)HCFC2 (select the gene name)
Genetic variants : HAPMAP29915
Genomic Variants (DGV)HCFC2 [DGVbeta]
DECIPHER (Syndromes)12:104458236-104500304  ENSG00000111727
CONAN: Copy Number AnalysisHCFC2 
Mutations
ICGC Data PortalHCFC2 
TCGA Data PortalHCFC2 
Broad Tumor PortalHCFC2
OASIS PortalHCFC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHCFC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHCFC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HCFC2
DgiDB (Drug Gene Interaction Database)HCFC2
DoCM (Curated mutations)HCFC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HCFC2 (select a term)
intoGenHCFC2
Cancer3DHCFC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607926   
Orphanet
MedgenHCFC2
Genetic Testing Registry HCFC2
NextProtQ9Y5Z7 [Medical]
TSGene29915
GENETestsHCFC2
Huge Navigator HCFC2 [HugePedia]
snp3D : Map Gene to Disease29915
BioCentury BCIQHCFC2
ClinGenHCFC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29915
Chemical/Pharm GKB GenePA134868925
Clinical trialHCFC2
Miscellaneous
canSAR (ICR)HCFC2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCFC2
EVEXHCFC2
GoPubMedHCFC2
iHOPHCFC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:07:28 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.