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HCG11 (HLA complex group 11)

Identity

Other aliasCTA-14H9.3
bK14H9.3
HGNC (Hugo) HCG11
LocusID (NCBI) 493812
Atlas_Id 56775
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26521706 and ends at 26527384 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCG11   17707
Cards
Entrez_Gene (NCBI)HCG11  493812  HLA complex group 11
AliasesCTA-14H9.3; bK14H9.3
GeneCards (Weizmann)HCG11
Ensembl hg19 (Hinxton)ENSG00000228223 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228223 [Gene_View]  ENSG00000228223 [Sequence]  chr6:26521706-26527384 [Contig_View]  HCG11 [Vega]
ICGC DataPortalENSG00000228223
TCGA cBioPortalHCG11
AceView (NCBI)HCG11
Genatlas (Paris)HCG11
WikiGenes493812
SOURCE (Princeton)HCG11
Genetics Home Reference (NIH)HCG11
Genomic and cartography
GoldenPath hg38 (UCSC)HCG11  -     chr6:26521706-26527384 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCG11  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHCG11 - 6p22.2 [CytoView hg19]  HCG11 - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHCG11 [Mapview hg19]  HCG11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024111 AK054919
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HCG11
Cluster EST : UnigeneHs.272939 [ NCBI ]
CGAP (NCI)Hs.272939
Alternative Splicing GalleryENSG00000228223
Gene ExpressionHCG11 [ NCBI-GEO ]   HCG11 [ EBI - ARRAY_EXPRESS ]   HCG11 [ SEEK ]   HCG11 [ MEM ]
Gene Expression Viewer (FireBrowse)HCG11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)493812
GTEX Portal (Tissue expression)HCG11
Human Protein AtlasENSG00000228223-HCG11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HCG11
DMDM Disease mutations493812
Blocks (Seattle)HCG11
Human Protein Atlas [tissue]ENSG00000228223-HCG11 [tissue]
Protein Interaction databases
FunCoupENSG00000228223
BioGRIDHCG11
STRING (EMBL)HCG11
ZODIACHCG11
Ontologies - Pathways
Huge Navigator HCG11 [HugePedia]
snp3D : Map Gene to Disease493812
BioCentury BCIQHCG11
ClinGenHCG11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD493812
Chemical/Pharm GKB GenePA134973711
Clinical trialHCG11
Miscellaneous
canSAR (ICR)HCG11 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCG11
EVEXHCG11
GoPubMedHCG11
iHOPHCG11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:10:18 CET 2018

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