Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HCG15 (HLA complex group 15 (non-protein coding))

Identity

Alias_namesHCG16
HLA complex group 15
HLA complex group 16 (non-protein coding)
HLA complex group 16
Alias_symbol (synonym)dJ25J6.6
dJ25J6.7
Other alias
HGNC (Hugo) HCG15
LocusID (NCBI) 414761
Atlas_Id 79062
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28984749 and ends at 28988567 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCG15   18361
Cards
Entrez_Gene (NCBI)HCG15  414761  HLA complex group 15 (non-protein coding)
AliasesHCG16
GeneCards (Weizmann)HCG15
Ensembl hg19 (Hinxton)ENSG00000227214 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227214 [Gene_View]  ENSG00000227214 [Sequence]  chr6:28984749-28988567 [Contig_View]  HCG15 [Vega]
ICGC DataPortalENSG00000227214
TCGA cBioPortalHCG15
AceView (NCBI)HCG15
Genatlas (Paris)HCG15
WikiGenes414761
SOURCE (Princeton)HCG15
Genetics Home Reference (NIH)HCG15
Genomic and cartography
GoldenPath hg38 (UCSC)HCG15  -     chr6:28984749-28988567 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCG15  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHCG15 - 6p22.1 [CytoView hg19]  HCG15 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHCG15 [Mapview hg19]  HCG15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI185588 DA877638
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HCG15
Cluster EST : UnigeneHs.571153 [ NCBI ]
CGAP (NCI)Hs.571153
Alternative Splicing GalleryENSG00000227214
Gene ExpressionHCG15 [ NCBI-GEO ]   HCG15 [ EBI - ARRAY_EXPRESS ]   HCG15 [ SEEK ]   HCG15 [ MEM ]
Gene Expression Viewer (FireBrowse)HCG15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)414761
GTEX Portal (Tissue expression)HCG15
Human Protein AtlasENSG00000227214-HCG15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HCG15
DMDM Disease mutations414761
Blocks (Seattle)HCG15
Human Protein Atlas [tissue]ENSG00000227214-HCG15 [tissue]
Protein Interaction databases
FunCoupENSG00000227214
BioGRIDHCG15
STRING (EMBL)HCG15
ZODIACHCG15
Ontologies - Pathways
Huge Navigator HCG15 [HugePedia]
snp3D : Map Gene to Disease414761
BioCentury BCIQHCG15
ClinGenHCG15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414761
Chemical/Pharm GKB GenePA134866422
Clinical trialHCG15
Miscellaneous
canSAR (ICR)HCG15 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCG15
EVEXHCG15
GoPubMedHCG15
iHOPHCG15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:48:37 CEST 2018

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