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HCG17 (HLA complex group 17 (non-protein coding))

Identity

Alias_symbol (synonym)NCRNA00046
LINC00046
Other aliasHCG18
HGNC (Hugo) HCG17
LocusID (NCBI) 414778
Atlas_Id 64197
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 30234039 and ends at 30326134 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCG17   31339
Cards
Entrez_Gene (NCBI)HCG17  414778  HLA complex group 17 (non-protein coding)
AliasesHCG18; LINC00046; NCRNA00046
GeneCards (Weizmann)HCG17
Ensembl hg19 (Hinxton)ENSG00000270604 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000270604 [Gene_View]  chr6:30234039-30326134 [Contig_View]  HCG17 [Vega]
ICGC DataPortalENSG00000270604
TCGA cBioPortalHCG17
AceView (NCBI)HCG17
Genatlas (Paris)HCG17
WikiGenes414778
SOURCE (Princeton)HCG17
Genetics Home Reference (NIH)HCG17
Genomic and cartography
GoldenPath hg38 (UCSC)HCG17  -     chr6:30234039-30326134 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCG17  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHCG17 - 6p22.1 [CytoView hg19]  HCG17 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHCG17 [Mapview hg19]  HCG17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI194060 BM683300 BM929327 BQ186667
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HCG17
Cluster EST : UnigeneHs.485041 [ NCBI ]
CGAP (NCI)Hs.485041
Alternative Splicing GalleryENSG00000270604
Gene ExpressionHCG17 [ NCBI-GEO ]   HCG17 [ EBI - ARRAY_EXPRESS ]   HCG17 [ SEEK ]   HCG17 [ MEM ]
Gene Expression Viewer (FireBrowse)HCG17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)414778
GTEX Portal (Tissue expression)HCG17
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HCG17
DMDM Disease mutations414778
Blocks (Seattle)HCG17
Human Protein AtlasENSG00000270604
Protein Interaction databases
FunCoupENSG00000270604
BioGRIDHCG17
STRING (EMBL)HCG17
ZODIACHCG17
Ontologies - Pathways
Huge Navigator HCG17 [HugePedia]
snp3D : Map Gene to Disease414778
BioCentury BCIQHCG17
ClinGenHCG17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414778
Chemical/Pharm GKB GenePA134883976
Clinical trialHCG17
Miscellaneous
canSAR (ICR)HCG17 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCG17
EVEXHCG17
GoPubMedHCG17
iHOPHCG17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:17 CEST 2017

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