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HCG18 (HLA complex group 18 (non-protein coding))

Identity

Alias_namesHLA complex group 18
Alias_symbol (synonym)FLJ31598
FLJ25550
Em:AB014087.1
Other alias-
HGNC (Hugo) HCG18
LocusID (NCBI) 414777
Atlas_Id 64198
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 30287397 and ends at 30327156 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCG18   31337
Cards
Entrez_Gene (NCBI)HCG18  414777  HLA complex group 18 (non-protein coding)
Aliases
GeneCards (Weizmann)HCG18
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:30287397-30327156 [Contig_View]  HCG18 [Vega]
TCGA cBioPortalHCG18
AceView (NCBI)HCG18
Genatlas (Paris)HCG18
WikiGenes414777
SOURCE (Princeton)HCG18
Genetics Home Reference (NIH)HCG18
Genomic and cartography
GoldenPath hg38 (UCSC)HCG18  -     chr6:30287397-30327156 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCG18  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHCG18 - 6p22.1 [CytoView hg19]  HCG18 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHCG18 [Mapview hg19]  HCG18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023334 AK055657 AK056160 AK098416 BC035165
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HCG18
Cluster EST : UnigeneHs.485041 [ NCBI ]
CGAP (NCI)Hs.485041
Gene ExpressionHCG18 [ NCBI-GEO ]   HCG18 [ EBI - ARRAY_EXPRESS ]   HCG18 [ SEEK ]   HCG18 [ MEM ]
Gene Expression Viewer (FireBrowse)HCG18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)414777
GTEX Portal (Tissue expression)HCG18
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HCG18
DMDM Disease mutations414777
Blocks (Seattle)HCG18
Protein Interaction databases
BioGRIDHCG18
STRING (EMBL)HCG18
ZODIACHCG18
Ontologies - Pathways
Huge Navigator HCG18 [HugePedia]
snp3D : Map Gene to Disease414777
BioCentury BCIQHCG18
ClinGenHCG18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414777
Chemical/Pharm GKB GenePA134917494
Clinical trialHCG18
Miscellaneous
canSAR (ICR)HCG18 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCG18
EVEXHCG18
GoPubMedHCG18
iHOPHCG18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:48:37 CEST 2018

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