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HCG22 (HLA complex group 22)

Identity

Alias_namesHLA complex group 22 (non-protein coding)
Alias_symbol (synonym)FLJ37114
PBMUCL2
Other alias
HGNC (Hugo) HCG22
LocusID (NCBI) 285834
Atlas_Id 64200
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31053450 and ends at 31059878 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCG22   27780
Cards
Entrez_Gene (NCBI)HCG22  285834  HLA complex group 22
AliasesPBMUCL2
GeneCards (Weizmann)HCG22
Ensembl hg19 (Hinxton)ENSG00000228789 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228789 [Gene_View]  ENSG00000228789 [Sequence]  chr6:31053450-31059878 [Contig_View]  HCG22 [Vega]
ICGC DataPortalENSG00000228789
TCGA cBioPortalHCG22
AceView (NCBI)HCG22
Genatlas (Paris)HCG22
WikiGenes285834
SOURCE (Princeton)HCG22
Genetics Home Reference (NIH)HCG22
Genomic and cartography
GoldenPath hg38 (UCSC)HCG22  -     chr6:31053450-31059878 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCG22  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblHCG22 - 6p21.33 [CytoView hg19]  HCG22 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIHCG22 [Mapview hg19]  HCG22 [Mapview hg38]
OMIM613918   
Gene and transcription
Genbank (Entrez)AB560771 AB600644 AK094433
RefSeq transcript (Entrez)NM_001348249
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HCG22
Cluster EST : UnigeneHs.207528 [ NCBI ]
CGAP (NCI)Hs.207528
Alternative Splicing GalleryENSG00000228789
Gene ExpressionHCG22 [ NCBI-GEO ]   HCG22 [ EBI - ARRAY_EXPRESS ]   HCG22 [ SEEK ]   HCG22 [ MEM ]
Gene Expression Viewer (FireBrowse)HCG22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285834
GTEX Portal (Tissue expression)HCG22
Human Protein AtlasENSG00000228789-HCG22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtE2RYF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE2RYF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE2RYF7
Splice isoforms : SwissVarE2RYF7
PhosPhoSitePlusE2RYF7
Domains : Interpro (EBI)Mucin-like   
Domain families : Pfam (Sanger)Mucin-like (PF16058)   
Domain families : Pfam (NCBI)pfam16058   
Conserved Domain (NCBI)HCG22
DMDM Disease mutations285834
Blocks (Seattle)HCG22
SuperfamilyE2RYF7
Human Protein Atlas [tissue]ENSG00000228789-HCG22 [tissue]
Peptide AtlasE2RYF7
IPIIPI00455721   
Protein Interaction databases
DIP (DOE-UCLA)E2RYF7
IntAct (EBI)E2RYF7
FunCoupENSG00000228789
BioGRIDHCG22
STRING (EMBL)HCG22
ZODIACHCG22
Ontologies - Pathways
QuickGOE2RYF7
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkHCG22
Atlas of Cancer Signalling NetworkHCG22
Wikipedia pathwaysHCG22
Orthology - Evolution
OrthoDB285834
GeneTree (enSembl)ENSG00000228789
Phylogenetic Trees/Animal Genes : TreeFamHCG22
HOVERGENE2RYF7
HOGENOME2RYF7
Homologs : HomoloGeneHCG22
Homology/Alignments : Family Browser (UCSC)HCG22
Gene fusions - Rearrangements
Fusion : QuiverHCG22
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHCG22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HCG22
dbVarHCG22
ClinVarHCG22
1000_GenomesHCG22 
Exome Variant ServerHCG22
ExAC (Exome Aggregation Consortium)ENSG00000228789
GNOMAD BrowserENSG00000228789
Varsome BrowserHCG22
Genetic variants : HAPMAP285834
Genomic Variants (DGV)HCG22 [DGVbeta]
DECIPHERHCG22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHCG22 
Mutations
ICGC Data PortalHCG22 
TCGA Data PortalHCG22 
Broad Tumor PortalHCG22
OASIS PortalHCG22 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHCG22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HCG22
DgiDB (Drug Gene Interaction Database)HCG22
DoCM (Curated mutations)HCG22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HCG22 (select a term)
intoGenHCG22
Cancer3DHCG22(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613918   
Orphanet
DisGeNETHCG22
MedgenHCG22
Genetic Testing Registry HCG22
NextProtE2RYF7 [Medical]
TSGene285834
GENETestsHCG22
Target ValidationHCG22
Huge Navigator HCG22 [HugePedia]
snp3D : Map Gene to Disease285834
BioCentury BCIQHCG22
ClinGenHCG22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285834
Chemical/Pharm GKB GenePA134876212
Clinical trialHCG22
Miscellaneous
canSAR (ICR)HCG22 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCG22
EVEXHCG22
GoPubMedHCG22
iHOPHCG22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 13:48:38 CEST 2018

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