Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HCG23 (HLA complex group 23)

Identity

Alias_namesHLA complex group 23
Alias_symbol (synonym)dJ1077I5.3
Other alias
HGNC (Hugo) HCG23
LocusID (NCBI) 414764
Atlas_Id 64201
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 32390510 and ends at 32393691 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCG23   19713
Cards
Entrez_Gene (NCBI)HCG23  414764  HLA complex group 23
AliasesdJ1077I5.3
GeneCards (Weizmann)HCG23
Ensembl hg19 (Hinxton)ENSG00000225914 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225914 [Gene_View]  ENSG00000225914 [Sequence]  chr6:32390510-32393691 [Contig_View]  HCG23 [Vega]
ICGC DataPortalENSG00000225914
TCGA cBioPortalHCG23
AceView (NCBI)HCG23
Genatlas (Paris)HCG23
WikiGenes414764
SOURCE (Princeton)HCG23
Genetics Home Reference (NIH)HCG23
Genomic and cartography
GoldenPath hg38 (UCSC)HCG23  -     chr6:32390510-32393691 +  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCG23  -     6p21.32   [Description]    (hg19-Feb_2009)
GoldenPathHCG23 - 6p21.32 [CytoView hg19]  HCG23 - 6p21.32 [CytoView hg38]
ImmunoBaseENSG00000225914
Mapping of homologs : NCBIHCG23 [Mapview hg19]  HCG23 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249 NT_187692
Consensus coding sequences : CCDS (NCBI)HCG23
Cluster EST : UnigeneHs.57692 [ NCBI ]
CGAP (NCI)Hs.57692
Alternative Splicing GalleryENSG00000225914
Gene ExpressionHCG23 [ NCBI-GEO ]   HCG23 [ EBI - ARRAY_EXPRESS ]   HCG23 [ SEEK ]   HCG23 [ MEM ]
Gene Expression Viewer (FireBrowse)HCG23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)414764
GTEX Portal (Tissue expression)HCG23
Human Protein AtlasENSG00000225914-HCG23 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HCG23
DMDM Disease mutations414764
Blocks (Seattle)HCG23
Human Protein Atlas [tissue]ENSG00000225914-HCG23 [tissue]
Protein Interaction databases
FunCoupENSG00000225914
BioGRIDHCG23
STRING (EMBL)HCG23
ZODIACHCG23
Ontologies - Pathways
Huge Navigator HCG23 [HugePedia]
snp3D : Map Gene to Disease414764
BioCentury BCIQHCG23
ClinGenHCG23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414764
Chemical/Pharm GKB GenePA134909201
Clinical trialHCG23
Miscellaneous
canSAR (ICR)HCG23 (select the gene name)
DataMed IndexHCG23
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCG23
EVEXHCG23
GoPubMedHCG23
iHOPHCG23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:30:52 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.