Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HCG25 (HLA complex group 25 (non-protein coding))

Identity

Alias_namesHLA complex group 25
Alias_symbol (synonym)dJ1033B10.16
Other alias
HGNC (Hugo) HCG25
LocusID (NCBI) 414765
Atlas_Id 64202
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 33249536 and ends at 33254890 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HCG25 (6p21.32) / EEF1A1 (6q13)HCG25 (6p21.32) / ZBTB7C (18q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCG25   20196
Cards
Entrez_Gene (NCBI)HCG25  414765  HLA complex group 25 (non-protein coding)
AliasesdJ1033B10.16
GeneCards (Weizmann)HCG25
Ensembl hg19 (Hinxton)ENSG00000232940 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232940 [Gene_View]  ENSG00000232940 [Sequence]  chr6:33249536-33254890 [Contig_View]  HCG25 [Vega]
ICGC DataPortalENSG00000232940
TCGA cBioPortalHCG25
AceView (NCBI)HCG25
Genatlas (Paris)HCG25
WikiGenes414765
SOURCE (Princeton)HCG25
Genetics Home Reference (NIH)HCG25
Genomic and cartography
GoldenPath hg38 (UCSC)HCG25  -     chr6:33249536-33254890 +  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCG25  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblHCG25 - 6p21.32 [CytoView hg19]  HCG25 - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBIHCG25 [Mapview hg19]  HCG25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HCG25
Cluster EST : UnigeneHs.675862 [ NCBI ]
CGAP (NCI)Hs.675862
Alternative Splicing GalleryENSG00000232940
Gene ExpressionHCG25 [ NCBI-GEO ]   HCG25 [ EBI - ARRAY_EXPRESS ]   HCG25 [ SEEK ]   HCG25 [ MEM ]
Gene Expression Viewer (FireBrowse)HCG25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)414765
GTEX Portal (Tissue expression)HCG25
Human Protein AtlasENSG00000232940-HCG25 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HCG25
DMDM Disease mutations414765
Blocks (Seattle)HCG25
Human Protein Atlas [tissue]ENSG00000232940-HCG25 [tissue]
Protein Interaction databases
FunCoupENSG00000232940
BioGRIDHCG25
STRING (EMBL)HCG25
ZODIACHCG25
Ontologies - Pathways
Huge Navigator HCG25 [HugePedia]
snp3D : Map Gene to Disease414765
BioCentury BCIQHCG25
ClinGenHCG25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414765
Chemical/Pharm GKB GenePA134898257
Clinical trialHCG25
Miscellaneous
canSAR (ICR)HCG25 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCG25
EVEXHCG25
GoPubMedHCG25
iHOPHCG25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:48:39 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.