Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HCG27 (HLA complex group 27 (non-protein coding))

Identity

Alias_namesHLA complex group 27
Alias_symbol (synonym)bPG299F13.9
bCX101P6.9
bQB115I13.2
FLJ40123
Other alias
HGNC (Hugo) HCG27
LocusID (NCBI) 253018
Atlas_Id 64204
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31197760 and ends at 31203968 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCG27   27366
Cards
Entrez_Gene (NCBI)HCG27  253018  HLA complex group 27 (non-protein coding)
AliasesbCX101P6.9; bPG299F13.9; bQB115I13.2
GeneCards (Weizmann)HCG27
Ensembl hg19 (Hinxton)ENSG00000206344 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206344 [Gene_View]  ENSG00000206344 [Sequence]  chr6:31197760-31203968 [Contig_View]  HCG27 [Vega]
ICGC DataPortalENSG00000206344
TCGA cBioPortalHCG27
AceView (NCBI)HCG27
Genatlas (Paris)HCG27
WikiGenes253018
SOURCE (Princeton)HCG27
Genetics Home Reference (NIH)HCG27
Genomic and cartography
GoldenPath hg38 (UCSC)HCG27  -     chr6:31197760-31203968 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCG27  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblHCG27 - 6p21.33 [CytoView hg19]  HCG27 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIHCG27 [Mapview hg19]  HCG27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097442 BC041465 BC104432 BC104433 DB027671
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HCG27
Cluster EST : UnigeneHs.659818 [ NCBI ]
CGAP (NCI)Hs.659818
Alternative Splicing GalleryENSG00000206344
Gene ExpressionHCG27 [ NCBI-GEO ]   HCG27 [ EBI - ARRAY_EXPRESS ]   HCG27 [ SEEK ]   HCG27 [ MEM ]
Gene Expression Viewer (FireBrowse)HCG27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)253018
GTEX Portal (Tissue expression)HCG27
Human Protein AtlasENSG00000206344-HCG27 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HCG27
DMDM Disease mutations253018
Blocks (Seattle)HCG27
Human Protein Atlas [tissue]ENSG00000206344-HCG27 [tissue]
HPRD13637
IPIIPI00807608   
Protein Interaction databases
FunCoupENSG00000206344
BioGRIDHCG27
STRING (EMBL)HCG27
ZODIACHCG27
Ontologies - Pathways
Huge Navigator HCG27 [HugePedia]
snp3D : Map Gene to Disease253018
BioCentury BCIQHCG27
ClinGenHCG27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253018
Chemical/Pharm GKB GenePA134918966
Clinical trialHCG27
Miscellaneous
canSAR (ICR)HCG27 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCG27
EVEXHCG27
GoPubMedHCG27
iHOPHCG27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:48:39 CEST 2018

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