Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HCG4 (HLA complex group 4 (non-protein coding))

Identity

Alias_namesHCG4P10
HLA complex group 4
HLA complex group 4 pseudogene 10
Alias_symbol (synonym)HCGIV-10
HCGIV.9
Other alias
HGNC (Hugo) HCG4
LocusID (NCBI) 54435
Atlas_Id 64205
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29791031 and ends at 29793073 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCG4   21241
Cards
Entrez_Gene (NCBI)HCG4  54435  HLA complex group 4 (non-protein coding)
AliasesHCG4P10; HCGIV-10; HCGIV.9
GeneCards (Weizmann)HCG4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:29791031-29793073 [Contig_View]  HCG4 [Vega]
TCGA cBioPortalHCG4
AceView (NCBI)HCG4
Genatlas (Paris)HCG4
WikiGenes54435
SOURCE (Princeton)HCG4
Genetics Home Reference (NIH)HCG4
Genomic and cartography
GoldenPath hg38 (UCSC)HCG4  -     chr6:29791031-29793073 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCG4  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHCG4 - 6p22.1 [CytoView hg19]  HCG4 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHCG4 [Mapview hg19]  HCG4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF036977 BC011879 BC021249
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_002741 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HCG4
Cluster EST : UnigeneHs.660431 [ NCBI ]
CGAP (NCI)Hs.660431
Gene ExpressionHCG4 [ NCBI-GEO ]   HCG4 [ EBI - ARRAY_EXPRESS ]   HCG4 [ SEEK ]   HCG4 [ MEM ]
Gene Expression Viewer (FireBrowse)HCG4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)54435
GTEX Portal (Tissue expression)HCG4
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HCG4
DMDM Disease mutations54435
Blocks (Seattle)HCG4
Protein Interaction databases
BioGRIDHCG4
STRING (EMBL)HCG4
ZODIACHCG4
Ontologies - Pathways
Huge Navigator HCG4 [HugePedia]
snp3D : Map Gene to Disease54435
BioCentury BCIQHCG4
ClinGenHCG4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54435
Chemical/Pharm GKB GenePA134906359
Clinical trialHCG4
Miscellaneous
canSAR (ICR)HCG4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCG4
EVEXHCG4
GoPubMedHCG4
iHOPHCG4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:48:39 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.