Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HCG4B (HLA complex group 4B (non-protein coding))

Identity

Alias_namesHCG4P6
HLA complex group 4 pseudogene 6
Alias_symbol (synonym)HCGIV-6
HCGIV.5
HCGIV-06
bCX67J3.3
Em:AB023056.16
bPG309N1.1
bQB90C11.3
Other alias
HGNC (Hugo) HCG4B
LocusID (NCBI) 80868
Atlas_Id 64206
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29924592 and ends at 29927215 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCG4B   22919
Cards
Entrez_Gene (NCBI)HCG4B  80868  HLA complex group 4B (non-protein coding)
AliasesHCG4P6; HCGIV-06; HCGIV-6; HCGIV.5; 
bCX67J3.3; bPG309N1.1; bQB90C11.3
GeneCards (Weizmann)HCG4B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:29924592-29927215 [Contig_View]  HCG4B [Vega]
TCGA cBioPortalHCG4B
AceView (NCBI)HCG4B
Genatlas (Paris)HCG4B
WikiGenes80868
SOURCE (Princeton)HCG4B
Genetics Home Reference (NIH)HCG4B
Genomic and cartography
GoldenPath hg38 (UCSC)HCG4B  -     chr6:29924592-29927215 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCG4B  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHCG4B - 6p22.1 [CytoView hg19]  HCG4B - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHCG4B [Mapview hg19]  HCG4B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056727 X81005
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HCG4B
Cluster EST : UnigeneHs.732684 [ NCBI ]
CGAP (NCI)Hs.732684
Gene ExpressionHCG4B [ NCBI-GEO ]   HCG4B [ EBI - ARRAY_EXPRESS ]   HCG4B [ SEEK ]   HCG4B [ MEM ]
Gene Expression Viewer (FireBrowse)HCG4B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)80868
GTEX Portal (Tissue expression)HCG4B
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HCG4B
DMDM Disease mutations80868
Blocks (Seattle)HCG4B
IPIIPI00065545   
Protein Interaction databases
BioGRIDHCG4B
STRING (EMBL)HCG4B
ZODIACHCG4B
Ontologies - Pathways
Huge Navigator HCG4B [HugePedia]
snp3D : Map Gene to Disease80868
BioCentury BCIQHCG4B
ClinGenHCG4B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80868
Chemical/Pharm GKB GenePA134990504
Clinical trialHCG4B
Miscellaneous
canSAR (ICR)HCG4B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCG4B
EVEXHCG4B
GoPubMedHCG4B
iHOPHCG4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:48:40 CEST 2018

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