Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HCG9 (HLA complex group 9 (non-protein coding))

Identity

Alias_namesHLA complex group 9
Alias_symbol (synonym)PERB11
HCGIX
HCGIX4
HCGIX-4
Other alias
HGNC (Hugo) HCG9
LocusID (NCBI) 10255
Atlas_Id 64208
Location 6_GL000256v2_alt  [Link to chromosome band 6]
Location_base_pair Starts at 1272897 and ends at 1273503 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCG9   21243
Cards
Entrez_Gene (NCBI)HCG9  10255  HLA complex group 9 (non-protein coding)
AliasesHCGIX; HCGIX4
GeneCards (Weizmann)HCG9
Ensembl hg19 (Hinxton)ENSG00000204625 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204625 [Gene_View]  chr6_GL000256v2_alt:1272897-1273503 [Contig_View]  HCG9 [Vega]
ICGC DataPortalENSG00000204625
TCGA cBioPortalHCG9
AceView (NCBI)HCG9
Genatlas (Paris)HCG9
WikiGenes10255
SOURCE (Princeton)HCG9
Genetics Home Reference (NIH)HCG9
Genomic and cartography
GoldenPath hg38 (UCSC)HCG9  -     chr6_GL000256v2_alt:1272897-1273503 +  6_GL000256v2_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCG9  -     6_GL000256v2_alt   [Description]    (hg19-Feb_2009)
EnsemblHCG9 - 6_GL000256v2_alt [CytoView hg19]  HCG9 - 6_GL000256v2_alt [CytoView hg38]
Mapping of homologs : NCBIHCG9 [Mapview hg19]  HCG9 [Mapview hg38]
OMIM615797   
Gene and transcription
Genbank (Entrez)AK289926 BC148573 BC156749 DA293452 X95289
RefSeq transcript (Entrez)NM_005844
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HCG9
Cluster EST : UnigeneHs.656251 [ NCBI ]
CGAP (NCI)Hs.656251
Alternative Splicing GalleryENSG00000204625
Gene ExpressionHCG9 [ NCBI-GEO ]   HCG9 [ EBI - ARRAY_EXPRESS ]   HCG9 [ SEEK ]   HCG9 [ MEM ]
Gene Expression Viewer (FireBrowse)HCG9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)10255
GTEX Portal (Tissue expression)HCG9
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HCG9
DMDM Disease mutations10255
Blocks (Seattle)HCG9
Human Protein AtlasENSG00000204625
HPRD17092
IPIIPI00646023   
Protein Interaction databases
FunCoupENSG00000204625
BioGRIDHCG9
STRING (EMBL)HCG9
ZODIACHCG9
Ontologies - Pathways
Huge Navigator HCG9 [HugePedia]
snp3D : Map Gene to Disease10255
BioCentury BCIQHCG9
ClinGenHCG9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10255
Chemical/Pharm GKB GenePA134986814
Clinical trialHCG9
Miscellaneous
canSAR (ICR)HCG9 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCG9
EVEXHCG9
GoPubMedHCG9
iHOPHCG9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:19 CEST 2017

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