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HCP5 (HLA complex P5)

Identity

Alias_namesHLA complex P5
Alias_symbol (synonym)D6S2650E
P5-1
Other alias6S2650E
HGNC (Hugo) HCP5
LocusID (NCBI) 10866
Atlas_Id 53883
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31463180 and ends at 31465809 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCP5   21659
Cards
Entrez_Gene (NCBI)HCP5  10866  HLA complex P5
Aliases6S2650E; D6S2650E; P5-1
GeneCards (Weizmann)HCP5
Ensembl hg19 (Hinxton)ENSG00000206337 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206337 [Gene_View]  ENSG00000206337 [Sequence]  chr6:31463180-31465809 [Contig_View]  HCP5 [Vega]
ICGC DataPortalENSG00000206337
TCGA cBioPortalHCP5
AceView (NCBI)HCP5
Genatlas (Paris)HCP5
WikiGenes10866
SOURCE (Princeton)HCP5
Genetics Home Reference (NIH)HCP5
Genomic and cartography
GoldenPath hg38 (UCSC)HCP5  -     chr6:31463180-31465809 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCP5  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblHCP5 - 6p21.33 [CytoView hg19]  HCP5 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIHCP5 [Mapview hg19]  HCP5 [Mapview hg38]
OMIM604676   
Gene and transcription
Genbank (Entrez)AK093953 AK290875 BC106759 BC113853 BC114462
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167247 NT_167249
Consensus coding sequences : CCDS (NCBI)HCP5
Cluster EST : UnigeneHs.691948 [ NCBI ]
CGAP (NCI)Hs.691948
Alternative Splicing GalleryENSG00000206337
Gene ExpressionHCP5 [ NCBI-GEO ]   HCP5 [ EBI - ARRAY_EXPRESS ]   HCP5 [ SEEK ]   HCP5 [ MEM ]
Gene Expression Viewer (FireBrowse)HCP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10866
GTEX Portal (Tissue expression)HCP5
Human Protein AtlasENSG00000206337-HCP5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6MZN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6MZN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6MZN7
Splice isoforms : SwissVarQ6MZN7
PhosPhoSitePlusQ6MZN7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HCP5
DMDM Disease mutations10866
Blocks (Seattle)HCP5
SuperfamilyQ6MZN7
Human Protein Atlas [tissue]ENSG00000206337-HCP5 [tissue]
Peptide AtlasQ6MZN7
HPRD05245
IPIIPI00418320   
Protein Interaction databases
DIP (DOE-UCLA)Q6MZN7
IntAct (EBI)Q6MZN7
FunCoupENSG00000206337
BioGRIDHCP5
STRING (EMBL)HCP5
ZODIACHCP5
Ontologies - Pathways
QuickGOQ6MZN7
Ontology : AmiGOdefense response  
Ontology : EGO-EBIdefense response  
NDEx NetworkHCP5
Atlas of Cancer Signalling NetworkHCP5
Wikipedia pathwaysHCP5
Orthology - Evolution
OrthoDB10866
GeneTree (enSembl)ENSG00000206337
Phylogenetic Trees/Animal Genes : TreeFamHCP5
HOVERGENQ6MZN7
HOGENOMQ6MZN7
Homologs : HomoloGeneHCP5
Homology/Alignments : Family Browser (UCSC)HCP5
Gene fusions - Rearrangements
Fusion : QuiverHCP5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHCP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HCP5
dbVarHCP5
ClinVarHCP5
1000_GenomesHCP5 
Exome Variant ServerHCP5
ExAC (Exome Aggregation Consortium)ENSG00000206337
GNOMAD BrowserENSG00000206337
Varsome BrowserHCP5
Genetic variants : HAPMAP10866
Genomic Variants (DGV)HCP5 [DGVbeta]
DECIPHERHCP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHCP5 
Mutations
ICGC Data PortalHCP5 
TCGA Data PortalHCP5 
Broad Tumor PortalHCP5
OASIS PortalHCP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHCP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHCP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Pharmacogenomics of Infectious Diseases (PGx_IfD )
BioMutasearch HCP5
DgiDB (Drug Gene Interaction Database)HCP5
DoCM (Curated mutations)HCP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HCP5 (select a term)
intoGenHCP5
Cancer3DHCP5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604676   
Orphanet
DisGeNETHCP5
MedgenHCP5
Genetic Testing Registry HCP5
NextProtQ6MZN7 [Medical]
TSGene10866
GENETestsHCP5
Target ValidationHCP5
Huge Navigator HCP5 [HugePedia]
snp3D : Map Gene to Disease10866
BioCentury BCIQHCP5
ClinGenHCP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10866
Chemical/Pharm GKB GenePA134951826
Clinical trialHCP5
Miscellaneous
canSAR (ICR)HCP5 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCP5
EVEXHCP5
GoPubMedHCP5
iHOPHCP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:10:20 CET 2018

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