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HCP5B (HLA complex P5B (non-protein coding))

Identity

Alias_namesHCP5P10
HLA complex P5 pseudogene 10
Alias_symbol (synonym)P5-10
P5.9
Other alias
HGNC (Hugo) HCP5B
LocusID (NCBI) 352990
Atlas_Id 79878
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29871895 and ends at 29873783 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HCP5B   30984
Cards
Entrez_Gene (NCBI)HCP5B  352990  HLA complex P5B (non-protein coding)
AliasesHCP5P10; P5-10; P5.9
GeneCards (Weizmann)HCP5B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:29871895-29873783 [Contig_View]  HCP5B [Vega]
TCGA cBioPortalHCP5B
AceView (NCBI)HCP5B
Genatlas (Paris)HCP5B
WikiGenes352990
SOURCE (Princeton)HCP5B
Genetics Home Reference (NIH)HCP5B
Genomic and cartography
GoldenPath hg38 (UCSC)HCP5B  -     chr6:29871895-29873783 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCP5B  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHCP5B - 6p22.1 [CytoView hg19]  HCP5B - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHCP5B [Mapview hg19]  HCP5B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC035659 BC035828
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HCP5B
Gene ExpressionHCP5B [ NCBI-GEO ]   HCP5B [ EBI - ARRAY_EXPRESS ]   HCP5B [ SEEK ]   HCP5B [ MEM ]
Gene Expression Viewer (FireBrowse)HCP5B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)352990
GTEX Portal (Tissue expression)HCP5B
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HCP5B
DMDM Disease mutations352990
Blocks (Seattle)HCP5B
Protein Interaction databases
BioGRIDHCP5B
STRING (EMBL)HCP5B
ZODIACHCP5B
Ontologies - Pathways
Huge Navigator HCP5B [HugePedia]
snp3D : Map Gene to Disease352990
BioCentury BCIQHCP5B
ClinGenHCP5B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD352990
Chemical/Pharm GKB GenePA134865940
Clinical trialHCP5B
Miscellaneous
canSAR (ICR)HCP5B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCP5B
EVEXHCP5B
GoPubMedHCP5B
iHOPHCP5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:48:41 CEST 2018

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