Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HDAC11 (histone deacetylase 11)

Identity

Other aliasHD11
HGNC (Hugo) HDAC11
LocusID (NCBI) 79885
Atlas_Id 46206
Location 3p25.1  [Link to chromosome band 3p25]
Location_base_pair Starts at 13480344 and ends at 13506424 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HDAC11 (3p25.1) / HDAC11 (3p25.1)HDAC11 (3p25.1) / TEAD3 (6p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HDAC11   19086
Cards
Entrez_Gene (NCBI)HDAC11  79885  histone deacetylase 11
AliasesHD11
GeneCards (Weizmann)HDAC11
Ensembl hg19 (Hinxton)ENSG00000163517 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163517 [Gene_View]  chr3:13480344-13506424 [Contig_View]  HDAC11 [Vega]
ICGC DataPortalENSG00000163517
TCGA cBioPortalHDAC11
AceView (NCBI)HDAC11
Genatlas (Paris)HDAC11
WikiGenes79885
SOURCE (Princeton)HDAC11
Genetics Home Reference (NIH)HDAC11
Genomic and cartography
GoldenPath hg38 (UCSC)HDAC11  -     chr3:13480344-13506424 +  3p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HDAC11  -     3p25.1   [Description]    (hg19-Feb_2009)
EnsemblHDAC11 - 3p25.1 [CytoView hg19]  HDAC11 - 3p25.1 [CytoView hg38]
Mapping of homologs : NCBIHDAC11 [Mapview hg19]  HDAC11 [Mapview hg38]
OMIM607226   
Gene and transcription
Genbank (Entrez)AK025426 AK025890 AK293223 AK299021 AL137362
RefSeq transcript (Entrez)NM_001136041 NM_001330636 NM_024827
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HDAC11
Cluster EST : UnigeneHs.744132 [ NCBI ]
CGAP (NCI)Hs.744132
Alternative Splicing GalleryENSG00000163517
Gene ExpressionHDAC11 [ NCBI-GEO ]   HDAC11 [ EBI - ARRAY_EXPRESS ]   HDAC11 [ SEEK ]   HDAC11 [ MEM ]
Gene Expression Viewer (FireBrowse)HDAC11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79885
GTEX Portal (Tissue expression)HDAC11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DB2
Splice isoforms : SwissVarQ96DB2
PhosPhoSitePlusQ96DB2
Domains : Interpro (EBI)His_deacetylse    His_deacetylse_dom   
Domain families : Pfam (Sanger)Hist_deacetyl (PF00850)   
Domain families : Pfam (NCBI)pfam00850   
Conserved Domain (NCBI)HDAC11
DMDM Disease mutations79885
Blocks (Seattle)HDAC11
SuperfamilyQ96DB2
Human Protein AtlasENSG00000163517
Peptide AtlasQ96DB2
HPRD09146
IPIIPI00304324   IPI00878794   IPI00877858   IPI00877702   IPI00790809   IPI00877992   IPI00879882   IPI00879737   IPI00879880   IPI00879695   IPI00880085   IPI00879927   IPI00879107   IPI00925544   IPI00470376   IPI01013583   
Protein Interaction databases
DIP (DOE-UCLA)Q96DB2
IntAct (EBI)Q96DB2
FunCoupENSG00000163517
BioGRIDHDAC11
STRING (EMBL)HDAC11
ZODIACHDAC11
Ontologies - Pathways
QuickGOQ96DB2
Ontology : AmiGOhistone deacetylase complex  histone deacetylase activity  nucleus  plasma membrane  chromatin organization  transcription, DNA-templated  regulation of transcription, DNA-templated  transcription factor binding  oligodendrocyte development  histone deacetylation  NAD-dependent histone deacetylase activity (H3-K14 specific)  extracellular exosome  histone H3 deacetylation  
Ontology : EGO-EBIhistone deacetylase complex  histone deacetylase activity  nucleus  plasma membrane  chromatin organization  transcription, DNA-templated  regulation of transcription, DNA-templated  transcription factor binding  oligodendrocyte development  histone deacetylation  NAD-dependent histone deacetylase activity (H3-K14 specific)  extracellular exosome  histone H3 deacetylation  
Pathways : KEGGAlcoholism    Viral carcinogenesis   
NDEx NetworkHDAC11
Atlas of Cancer Signalling NetworkHDAC11
Wikipedia pathwaysHDAC11
Orthology - Evolution
OrthoDB79885
GeneTree (enSembl)ENSG00000163517
Phylogenetic Trees/Animal Genes : TreeFamHDAC11
HOVERGENQ96DB2
HOGENOMQ96DB2
Homologs : HomoloGeneHDAC11
Homology/Alignments : Family Browser (UCSC)HDAC11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHDAC11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HDAC11
dbVarHDAC11
ClinVarHDAC11
1000_GenomesHDAC11 
Exome Variant ServerHDAC11
ExAC (Exome Aggregation Consortium)HDAC11 (select the gene name)
Genetic variants : HAPMAP79885
Genomic Variants (DGV)HDAC11 [DGVbeta]
DECIPHERHDAC11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHDAC11 
Mutations
ICGC Data PortalHDAC11 
TCGA Data PortalHDAC11 
Broad Tumor PortalHDAC11
OASIS PortalHDAC11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHDAC11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHDAC11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HDAC11
DgiDB (Drug Gene Interaction Database)HDAC11
DoCM (Curated mutations)HDAC11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HDAC11 (select a term)
intoGenHDAC11
Cancer3DHDAC11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607226   
Orphanet
MedgenHDAC11
Genetic Testing Registry HDAC11
NextProtQ96DB2 [Medical]
TSGene79885
GENETestsHDAC11
Target ValidationHDAC11
Huge Navigator HDAC11 [HugePedia]
snp3D : Map Gene to Disease79885
BioCentury BCIQHDAC11
ClinGenHDAC11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79885
Chemical/Pharm GKB GenePA38793
Clinical trialHDAC11
Miscellaneous
canSAR (ICR)HDAC11 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHDAC11
EVEXHDAC11
GoPubMedHDAC11
iHOPHDAC11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:36:31 CEST 2017

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