HDAC9 (histone deacetylase 9)

Identity

Other names	DKFZp779K1053
	HD7
	HDAC
	HDAC7
	HDAC7B
	HDAC9B
	HDAC9FL
	HDRP
	KIAA0744
	MITR
HGNC	HDAC9
Location	7p21.1
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	HDAC9   14065
Entrez_Gene	HDAC9  9734  histone deacetylase 9
	Cards
GeneCards	HDAC9
Ensembl	HDAC9 [Search_View]   ENSG00000075856 [Gene_View]
Genatlas	HDAC9
GeneLynx	HDAC9
eGenome	HDAC9
euGene	9734
	Genomic and cartography
GoldenPath	HDAC9  -  7p21.1   chr7:18501894-18674990 +  7p21.1   [Description]    (hg18-March_2006)
Ensembl	HDAC9 - 7p21.1 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	HDAC9
	Gene and transcription
Genbank	AA405905 [ ENTREZ ]
Genbank	AB018287 [ ENTREZ ]
Genbank	AF124924 [ ENTREZ ]
Genbank	AJ459808 [ ENTREZ ]
Genbank	AK095820 [ ENTREZ ]
RefSeq	NM_014707 [ SRS ]    NM_014707 [ ENTREZ ]
RefSeq	NM_058176 [ SRS ]    NM_058176 [ ENTREZ ]
RefSeq	NM_058177 [ SRS ]    NM_058177 [ ENTREZ ]
RefSeq	NM_178423 [ SRS ]    NM_178423 [ ENTREZ ]
RefSeq	NM_178425 [ SRS ]    NM_178425 [ ENTREZ ]
RefSeq	AC_000050 [ SRS ]    AC_000050 [ ENTREZ ]
RefSeq	AC_000068 [ SRS ]    AC_000068 [ ENTREZ ]
RefSeq	AC_000139 [ SRS ]    AC_000139 [ ENTREZ ]
RefSeq	NC_000007 [ SRS ]    NC_000007 [ ENTREZ ]
RefSeq	NT_007819 [ SRS ]    NT_007819 [ ENTREZ ]
RefSeq	NT_079592 [ SRS ]    NT_079592 [ ENTREZ ]
RefSeq	NW_001839003 [ SRS ]    NW_001839003 [ ENTREZ ]
RefSeq	NW_923240 [ SRS ]    NW_923240 [ ENTREZ ]
AceView	HDAC9 AceView - NCBI
Unigene	Hs.196054 [ SRS ]    Hs.196054 [ NCBI ]     HS196054 [ spliceNest ]
Fast-db	2340 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q68D71 [ SRS]    Q68D71 [ EXPASY ]     Q68D71 [ INTERPRO ]     Q68D71 [ UNIPROT ]
Interpro	IPR000286 His_deacetylse [ SRS ]    IPR000286 His_deacetylse [ EBI ]
CluSTr	Q68D71
Blocks	Q68D71
HPRD	05944
	Protein Interaction databases
DIP	Q68D71
IntAct	Q68D71
	Polymorphism : SNP, mutations, diseases
OMIM	606543    [ map ]
GENECLINICS	606543
SNP	HDAC9 [dbSNP-NCBI]
SNP	NM_014707 [SNP-NCI]
SNP	NM_058176 [SNP-NCI]
SNP	NM_058177 [SNP-NCI]
SNP	NM_178423 [SNP-NCI]
SNP	NM_178425 [SNP-NCI]
SNP	HDAC9 [GeneSNPs - Utah]  HDAC9] [HGBASE - SRS]
HAPMAP	HDAC9 [HAPMAP]
COSMIC	HDAC9 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	HDAC9
	General knowledge
Family Browser	HDAC9 [UCSC Family Browser]
SOURCE	NM_014707
SOURCE	NM_058176
SOURCE	NM_058177
SOURCE	NM_178423
SOURCE	NM_178425
SMD	Hs.196054
SAGE	Hs.196054
GO	histone deacetylase complex [Amigo]  histone deacetylase complex
GO	histone deacetylase activity [Amigo]  histone deacetylase activity
GO	nucleus [Amigo]  nucleus
GO	cytoplasm [Amigo]  cytoplasm
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	inflammatory response [Amigo]  inflammatory response
GO	transcription factor binding [Amigo]  transcription factor binding
GO	specific transcriptional repressor activity [Amigo]  specific transcriptional repressor activity
GO	chromatin modification [Amigo]  chromatin modification
GO	histone deacetylation [Amigo]  histone deacetylation
GO	hydrolase activity [Amigo]  hydrolase activity
GO	B cell differentiation [Amigo]  B cell differentiation
GO	negative regulation of striated muscle development [Amigo]  negative regulation of striated muscle development
BIOCARTA	Inhibition of Huntington's disease neurodegeneration by histone deacetylase inhibitors    [Genes]
BIOCARTA	Signal Dependent Regulation of Myogenesis by Corepressor MITR    [Genes]
BIOCARTA	Cell Cycle: G1/S Check Point    [Genes]
BIOCARTA	Role of MEF2D in T-cell Apoptosis    [Genes]
BIOCARTA	Downregulated of MTA-3 in ER-negative Breast Tumors    [Genes]
BIOCARTA	Multi-step Regulation of Transcription by Pitx2    [Genes]
BIOCARTA	The PRC2 Complex Sets Long-term Gene Silencing Through Modification of Histone Tails    [Genes]
BIOCARTA	Sumoylation by RanBP2 Regulates Transcriptional Repression    [Genes]
BIOCARTA	Overview of telomerase protein component gene hTert Transcriptional Regulation    [Genes]
BIOCARTA	Control of Gene Expression by Vitamin D Receptor    [Genes]
BIOCARTA	WNT Signaling Pathway    [Genes]
PubGene	HDAC9
TreeFam	HDAC9
CTD	9734 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	HDAC9 Related clones (RZPD - Berlin)
	PubMed
PubMed	36 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:13:53 2008