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HDGFL1 (HDGF like 1)

Identity

Alias_namesPWWP1
PWWP domain containing 1
Alias_symbol (synonym)dJ309H15.1
Other aliasHRP-1
Hdgfrp1
HGNC (Hugo) HDGFL1
LocusID (NCBI) 154150
Atlas_Id 64215
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 22569449 and ends at 22571662 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HDGFL1   21095
Cards
Entrez_Gene (NCBI)HDGFL1  154150  HDGF like 1
AliasesHRP-1; Hdgfrp1; PWWP1; dJ309H15.1
GeneCards (Weizmann)HDGFL1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:22569449-22571662 [Contig_View]  HDGFL1 [Vega]
TCGA cBioPortalHDGFL1
AceView (NCBI)HDGFL1
Genatlas (Paris)HDGFL1
WikiGenes154150
SOURCE (Princeton)HDGFL1
Genetics Home Reference (NIH)HDGFL1
Genomic and cartography
GoldenPath hg38 (UCSC)HDGFL1  -     chr6:22569449-22571662 +  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HDGFL1  -     6p22.3   [Description]    (hg19-Feb_2009)
EnsemblHDGFL1 - 6p22.3 [CytoView hg19]  HDGFL1 - 6p22.3 [CytoView hg38]
Mapping of homologs : NCBIHDGFL1 [Mapview hg19]  HDGFL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056824 AK302110 BC172324 CD358518 DB020205
RefSeq transcript (Entrez)NM_138574
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HDGFL1
Cluster EST : UnigeneHs.629246 [ NCBI ]
CGAP (NCI)Hs.629246
Gene ExpressionHDGFL1 [ NCBI-GEO ]   HDGFL1 [ EBI - ARRAY_EXPRESS ]   HDGFL1 [ SEEK ]   HDGFL1 [ MEM ]
Gene Expression Viewer (FireBrowse)HDGFL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)154150
GTEX Portal (Tissue expression)HDGFL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TGJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TGJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TGJ6
Splice isoforms : SwissVarQ5TGJ6
PhosPhoSitePlusQ5TGJ6
Domaine pattern : Prosite (Expaxy)PWWP (PS50812)   
Domains : Interpro (EBI)PWWP_dom   
Domain families : Pfam (Sanger)PWWP (PF00855)   
Domain families : Pfam (NCBI)pfam00855   
Domain families : Smart (EMBL)PWWP (SM00293)  
Conserved Domain (NCBI)HDGFL1
DMDM Disease mutations154150
Blocks (Seattle)HDGFL1
SuperfamilyQ5TGJ6
Peptide AtlasQ5TGJ6
HPRD17935
IPIIPI00102259   
Protein Interaction databases
DIP (DOE-UCLA)Q5TGJ6
IntAct (EBI)Q5TGJ6
BioGRIDHDGFL1
STRING (EMBL)HDGFL1
ZODIACHDGFL1
Ontologies - Pathways
QuickGOQ5TGJ6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkHDGFL1
Atlas of Cancer Signalling NetworkHDGFL1
Wikipedia pathwaysHDGFL1
Orthology - Evolution
OrthoDB154150
Phylogenetic Trees/Animal Genes : TreeFamHDGFL1
HOVERGENQ5TGJ6
HOGENOMQ5TGJ6
Homologs : HomoloGeneHDGFL1
Homology/Alignments : Family Browser (UCSC)HDGFL1
Gene fusions - Rearrangements
Fusion : QuiverHDGFL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHDGFL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HDGFL1
dbVarHDGFL1
ClinVarHDGFL1
1000_GenomesHDGFL1 
Exome Variant ServerHDGFL1
Varsome BrowserHDGFL1
Genetic variants : HAPMAP154150
Genomic Variants (DGV)HDGFL1 [DGVbeta]
DECIPHERHDGFL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHDGFL1 
Mutations
ICGC Data PortalHDGFL1 
TCGA Data PortalHDGFL1 
Broad Tumor PortalHDGFL1
OASIS PortalHDGFL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHDGFL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHDGFL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HDGFL1
DgiDB (Drug Gene Interaction Database)HDGFL1
DoCM (Curated mutations)HDGFL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HDGFL1 (select a term)
intoGenHDGFL1
Cancer3DHDGFL1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHDGFL1
MedgenHDGFL1
Genetic Testing Registry HDGFL1
NextProtQ5TGJ6 [Medical]
TSGene154150
GENETestsHDGFL1
Target ValidationHDGFL1
Huge Navigator HDGFL1 [HugePedia]
snp3D : Map Gene to Disease154150
BioCentury BCIQHDGFL1
ClinGenHDGFL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154150
Chemical/Pharm GKB GenePA134981303
Clinical trialHDGFL1
Miscellaneous
canSAR (ICR)HDGFL1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHDGFL1
EVEXHDGFL1
GoPubMedHDGFL1
iHOPHDGFL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:48:42 CEST 2018

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