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HDGFL2 (HDGF like 2)

Identity

Other aliasHDGF-2
HDGF2
HDGFRP2
HRP-2
HRP2
HGNC (Hugo) HDGFL2
LocusID (NCBI) 84717
Atlas_Id 56870
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4472196 and ends at 4502220 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)HDGFL2   14680
Cards
Entrez_Gene (NCBI)HDGFL2  84717  HDGF like 2
AliasesHDGF-2; HDGF2; HDGFRP2; HRP-2; 
HRP2
GeneCards (Weizmann)HDGFL2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:4472196-4502220 [Contig_View]  HDGFL2 [Vega]
TCGA cBioPortalHDGFL2
AceView (NCBI)HDGFL2
Genatlas (Paris)HDGFL2
WikiGenes84717
SOURCE (Princeton)HDGFL2
Genetics Home Reference (NIH)HDGFL2
Genomic and cartography
GoldenPath hg38 (UCSC)HDGFL2  -     chr19:4472196-4502220 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HDGFL2  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblHDGFL2 - 19p13.3 [CytoView hg19]  HDGFL2 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIHDGFL2 [Mapview hg19]  HDGFL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB208892 AF294267 AK027353 AL520441 AW054790
RefSeq transcript (Entrez)NM_001001520 NM_001348169 NM_032631
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HDGFL2
Cluster EST : UnigeneHs.43071 [ NCBI ]
CGAP (NCI)Hs.43071
Gene ExpressionHDGFL2 [ NCBI-GEO ]   HDGFL2 [ EBI - ARRAY_EXPRESS ]   HDGFL2 [ SEEK ]   HDGFL2 [ MEM ]
Gene Expression Viewer (FireBrowse)HDGFL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84717
GTEX Portal (Tissue expression)HDGFL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4V5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4V5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4V5
Splice isoforms : SwissVarQ7Z4V5
PhosPhoSitePlusQ7Z4V5
Domaine pattern : Prosite (Expaxy)PWWP (PS50812)   
Domains : Interpro (EBI)LEDGF    PWWP_dom    TFIIS_N   
Domain families : Pfam (Sanger)LEDGF (PF11467)    PWWP (PF00855)   
Domain families : Pfam (NCBI)pfam11467    pfam00855   
Domain families : Smart (EMBL)PWWP (SM00293)  
Conserved Domain (NCBI)HDGFL2
DMDM Disease mutations84717
Blocks (Seattle)HDGFL2
PDB (SRS)3EAE    3QBY    3QJ6   
PDB (PDBSum)3EAE    3QBY    3QJ6   
PDB (IMB)3EAE    3QBY    3QJ6   
PDB (RSDB)3EAE    3QBY    3QJ6   
Structural Biology KnowledgeBase3EAE    3QBY    3QJ6   
SCOP (Structural Classification of Proteins)3EAE    3QBY    3QJ6   
CATH (Classification of proteins structures)3EAE    3QBY    3QJ6   
SuperfamilyQ7Z4V5
Peptide AtlasQ7Z4V5
IPIIPI01018333   IPI00645387   IPI00013290   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4V5
IntAct (EBI)Q7Z4V5
BioGRIDHDGFL2
STRING (EMBL)HDGFL2
ZODIACHDGFL2
Ontologies - Pathways
QuickGOQ7Z4V5
Ontology : AmiGOchromatin binding  protein binding  nucleus  positive regulation of cell growth  
Ontology : EGO-EBIchromatin binding  protein binding  nucleus  positive regulation of cell growth  
NDEx NetworkHDGFL2
Atlas of Cancer Signalling NetworkHDGFL2
Wikipedia pathwaysHDGFL2
Orthology - Evolution
OrthoDB84717
Phylogenetic Trees/Animal Genes : TreeFamHDGFL2
HOVERGENQ7Z4V5
HOGENOMQ7Z4V5
Homologs : HomoloGeneHDGFL2
Homology/Alignments : Family Browser (UCSC)HDGFL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHDGFL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HDGFL2
dbVarHDGFL2
ClinVarHDGFL2
1000_GenomesHDGFL2 
Exome Variant ServerHDGFL2
ExAC (Exome Aggregation Consortium)HDGFL2 (select the gene name)
Genetic variants : HAPMAP84717
Genomic Variants (DGV)HDGFL2 [DGVbeta]
DECIPHERHDGFL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHDGFL2 
Mutations
ICGC Data PortalHDGFL2 
TCGA Data PortalHDGFL2 
Broad Tumor PortalHDGFL2
OASIS PortalHDGFL2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHDGFL2
BioMutasearch HDGFL2
DgiDB (Drug Gene Interaction Database)HDGFL2
DoCM (Curated mutations)HDGFL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HDGFL2 (select a term)
intoGenHDGFL2
Cancer3DHDGFL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHDGFL2
Genetic Testing Registry HDGFL2
NextProtQ7Z4V5 [Medical]
TSGene84717
GENETestsHDGFL2
Target ValidationHDGFL2
Huge Navigator HDGFL2 [HugePedia]
snp3D : Map Gene to Disease84717
BioCentury BCIQHDGFL2
ClinGenHDGFL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84717
Clinical trialHDGFL2
Miscellaneous
canSAR (ICR)HDGFL2 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHDGFL2
EVEXHDGFL2
GoPubMedHDGFL2
iHOPHDGFL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:11:14 CEST 2017

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