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HDGFL3 (HDGF like 3)

Identity

Other aliasCGI-142
HDGF-2
HDGF2
HDGFRP3
HRP-3
HGNC (Hugo) HDGFL3
LocusID (NCBI) 50810
Atlas_Id 56766
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 83138052 and ends at 83208018 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)HDGFL3   24937
Cards
Entrez_Gene (NCBI)HDGFL3  50810  HDGF like 3
AliasesCGI-142; HDGF-2; HDGF2; HDGFRP3; 
HRP-3
GeneCards (Weizmann)HDGFL3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:83138052-83208018 [Contig_View]  HDGFL3 [Vega]
TCGA cBioPortalHDGFL3
AceView (NCBI)HDGFL3
Genatlas (Paris)HDGFL3
WikiGenes50810
SOURCE (Princeton)HDGFL3
Genetics Home Reference (NIH)HDGFL3
Genomic and cartography
GoldenPath hg38 (UCSC)HDGFL3  -     chr15:83138052-83208018 -  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HDGFL3  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblHDGFL3 - 15q25.2 [CytoView hg19]  HDGFL3 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBIHDGFL3 [Mapview hg19]  HDGFL3 [Mapview hg38]
OMIM616643   
Gene and transcription
Genbank (Entrez)AA725615 AB029156 AF110642 AF151900 AK001280
RefSeq transcript (Entrez)NM_016073
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HDGFL3
Cluster EST : UnigeneHs.513954 [ NCBI ]
CGAP (NCI)Hs.513954
Gene ExpressionHDGFL3 [ NCBI-GEO ]   HDGFL3 [ EBI - ARRAY_EXPRESS ]   HDGFL3 [ SEEK ]   HDGFL3 [ MEM ]
Gene Expression Viewer (FireBrowse)HDGFL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50810
GTEX Portal (Tissue expression)HDGFL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3E1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3E1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3E1
Splice isoforms : SwissVarQ9Y3E1
PhosPhoSitePlusQ9Y3E1
Domaine pattern : Prosite (Expaxy)PWWP (PS50812)   
Domains : Interpro (EBI)PWWP_dom   
Domain families : Pfam (Sanger)PWWP (PF00855)   
Domain families : Pfam (NCBI)pfam00855   
Domain families : Smart (EMBL)PWWP (SM00293)  
Conserved Domain (NCBI)HDGFL3
DMDM Disease mutations50810
Blocks (Seattle)HDGFL3
SuperfamilyQ9Y3E1
Peptide AtlasQ9Y3E1
IPIIPI00007063   IPI00384555   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3E1
IntAct (EBI)Q9Y3E1
BioGRIDHDGFL3
STRING (EMBL)HDGFL3
ZODIACHDGFL3
Ontologies - Pathways
QuickGOQ9Y3E1
Ontology : AmiGOnucleus  nucleoplasm  cytosol  negative regulation of microtubule depolymerization  microtubule binding  growth factor activity  cell proliferation  tubulin binding  neuron projection development  microtubule polymerization  
Ontology : EGO-EBInucleus  nucleoplasm  cytosol  negative regulation of microtubule depolymerization  microtubule binding  growth factor activity  cell proliferation  tubulin binding  neuron projection development  microtubule polymerization  
NDEx NetworkHDGFL3
Atlas of Cancer Signalling NetworkHDGFL3
Wikipedia pathwaysHDGFL3
Orthology - Evolution
OrthoDB50810
Phylogenetic Trees/Animal Genes : TreeFamHDGFL3
HOVERGENQ9Y3E1
HOGENOMQ9Y3E1
Homologs : HomoloGeneHDGFL3
Homology/Alignments : Family Browser (UCSC)HDGFL3
Gene fusions - Rearrangements
Tumor Fusion PortalHDGFL3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHDGFL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HDGFL3
dbVarHDGFL3
ClinVarHDGFL3
1000_GenomesHDGFL3 
Exome Variant ServerHDGFL3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP50810
Genomic Variants (DGV)HDGFL3 [DGVbeta]
DECIPHERHDGFL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHDGFL3 
Mutations
ICGC Data PortalHDGFL3 
TCGA Data PortalHDGFL3 
Broad Tumor PortalHDGFL3
OASIS PortalHDGFL3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHDGFL3
BioMutasearch HDGFL3
DgiDB (Drug Gene Interaction Database)HDGFL3
DoCM (Curated mutations)HDGFL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HDGFL3 (select a term)
intoGenHDGFL3
Cancer3DHDGFL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616643   
Orphanet
DisGeNETHDGFL3
MedgenHDGFL3
Genetic Testing Registry HDGFL3
NextProtQ9Y3E1 [Medical]
TSGene50810
GENETestsHDGFL3
Target ValidationHDGFL3
Huge Navigator HDGFL3 [HugePedia]
snp3D : Map Gene to Disease50810
BioCentury BCIQHDGFL3
ClinGenHDGFL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50810
Clinical trialHDGFL3
Miscellaneous
canSAR (ICR)HDGFL3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHDGFL3
EVEXHDGFL3
GoPubMedHDGFL3
iHOPHDGFL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:15:54 CET 2017

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