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HDGFRP2 (hepatoma-derived growth factor-related protein 2)

Identity

Other aliasHDGF-2
HDGF2
HRP-2
HGNC (Hugo) -
LocusID (NCBI) 84717
Atlas_Id 55300
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4472193 and ends at 4502232 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)HDGFRP2  84717  hepatoma-derived growth factor-related protein 2
AliasesHDGF-2; HDGF2; HRP-2
GeneCards (Weizmann)HDGFRP2
Ensembl hg19 (Hinxton)ENSG00000167674 [Gene_View]  chr19:4472193-4502232 [Contig_View]  HDGFRP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167674 [Gene_View]  chr19:4472193-4502232 [Contig_View]  HDGFRP2 [Vega]
ICGC DataPortalENSG00000167674
TCGA cBioPortalHDGFRP2
AceView (NCBI)HDGFRP2
Genatlas (Paris)HDGFRP2
WikiGenes84717
SOURCE (Princeton)HDGFRP2
Genetics Home Reference (NIH)HDGFRP2
Genomic and cartography
GoldenPath hg19 (UCSC)HDGFRP2  -     chr19:4472193-4502232 +  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HDGFRP2  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblHDGFRP2 - 19p13.3 [CytoView hg19]  HDGFRP2 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIHDGFRP2 [Mapview hg19]  HDGFRP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB208892 AF294267 AK027353 AL520441 AW054790
RefSeq transcript (Entrez)NM_001001520 NM_032631
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)HDGFRP2
Cluster EST : UnigeneHs.43071 [ NCBI ]
CGAP (NCI)Hs.43071
Alternative Splicing GalleryENSG00000167674
Gene ExpressionHDGFRP2 [ NCBI-GEO ]   HDGFRP2 [ EBI - ARRAY_EXPRESS ]   HDGFRP2 [ SEEK ]   HDGFRP2 [ MEM ]
Gene Expression Viewer (FireBrowse)HDGFRP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84717
GTEX Portal (Tissue expression)HDGFRP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4V5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4V5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4V5
Splice isoforms : SwissVarQ7Z4V5
PhosPhoSitePlusQ7Z4V5
Domaine pattern : Prosite (Expaxy)PWWP (PS50812)   
Domains : Interpro (EBI)LEDGF    PWWP_dom    TFIIS_N   
Domain families : Pfam (Sanger)LEDGF (PF11467)    PWWP (PF00855)   
Domain families : Pfam (NCBI)pfam11467    pfam00855   
Domain families : Smart (EMBL)PWWP (SM00293)  
Conserved Domain (NCBI)HDGFRP2
DMDM Disease mutations84717
Blocks (Seattle)HDGFRP2
PDB (SRS)3EAE    3QBY    3QJ6   
PDB (PDBSum)3EAE    3QBY    3QJ6   
PDB (IMB)3EAE    3QBY    3QJ6   
PDB (RSDB)3EAE    3QBY    3QJ6   
Structural Biology KnowledgeBase3EAE    3QBY    3QJ6   
SCOP (Structural Classification of Proteins)3EAE    3QBY    3QJ6   
CATH (Classification of proteins structures)3EAE    3QBY    3QJ6   
SuperfamilyQ7Z4V5
Human Protein AtlasENSG00000167674
Peptide AtlasQ7Z4V5
HPRD13639
IPIIPI01018333   IPI00645387   IPI00013290   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4V5
IntAct (EBI)Q7Z4V5
FunCoupENSG00000167674
BioGRIDHDGFRP2
STRING (EMBL)HDGFRP2
ZODIACHDGFRP2
Ontologies - Pathways
QuickGOQ7Z4V5
Ontology : AmiGODNA binding  chromatin binding  protein binding  nucleus  transcription, DNA-templated  positive regulation of cell growth  
Ontology : EGO-EBIDNA binding  chromatin binding  protein binding  nucleus  transcription, DNA-templated  positive regulation of cell growth  
NDEx NetworkHDGFRP2
Atlas of Cancer Signalling NetworkHDGFRP2
Wikipedia pathwaysHDGFRP2
Orthology - Evolution
OrthoDB84717
GeneTree (enSembl)ENSG00000167674
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ7Z4V5
HOGENOMQ7Z4V5
Homologs : HomoloGeneHDGFRP2
Homology/Alignments : Family Browser (UCSC)HDGFRP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHDGFRP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HDGFRP2
dbVarHDGFRP2
ClinVarHDGFRP2
1000_GenomesHDGFRP2 
Exome Variant ServerHDGFRP2
ExAC (Exome Aggregation Consortium)HDGFRP2 (select the gene name)
Genetic variants : HAPMAP84717
Genomic Variants (DGV)HDGFRP2 [DGVbeta]
DECIPHER (Syndromes)19:4472193-4502232  ENSG00000167674
CONAN: Copy Number AnalysisHDGFRP2 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch HDGFRP2
DgiDB (Drug Gene Interaction Database)HDGFRP2
DoCM (Curated mutations)HDGFRP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HDGFRP2 (select a term)
intoGenHDGFRP2
Cancer3DHDGFRP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHDGFRP2
Genetic Testing Registry HDGFRP2
NextProtQ7Z4V5 [Medical]
TSGene84717
GENETestsHDGFRP2
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease84717
BioCentury BCIQHDGFRP2
ClinGenHDGFRP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84717
Clinical trialHDGFRP2
Miscellaneous
canSAR (ICR)HDGFRP2 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHDGFRP2
EVEXHDGFRP2
GoPubMedHDGFRP2
iHOPHDGFRP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:08:46 CET 2017

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