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HDGFRP3 (hepatoma-derived growth factor, related protein 3)

Identity

Other aliasCGI-142
HDGF-2
HDGF2
HRP-3
HGNC (Hugo) -
LocusID (NCBI) 50810
Atlas_Id 56046
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 83806804 and ends at 83876770 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)HDGFRP3  50810  hepatoma-derived growth factor, related protein 3
AliasesCGI-142; HDGF-2; HDGF2; HRP-3
GeneCards (Weizmann)HDGFRP3
Ensembl hg19 (Hinxton)ENSG00000166503 [Gene_View]  chr15:83806804-83876770 [Contig_View]  HDGFRP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166503 [Gene_View]  chr15:83806804-83876770 [Contig_View]  HDGFRP3 [Vega]
ICGC DataPortalENSG00000166503
TCGA cBioPortalHDGFRP3
AceView (NCBI)HDGFRP3
Genatlas (Paris)HDGFRP3
WikiGenes50810
SOURCE (Princeton)HDGFRP3
Genetics Home Reference (NIH)HDGFRP3
Genomic and cartography
GoldenPath hg19 (UCSC)HDGFRP3  -     chr15:83806804-83876770 -  15q25.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HDGFRP3  -     15q25.2   [Description]    (hg38-Dec_2013)
EnsemblHDGFRP3 - 15q25.2 [CytoView hg19]  HDGFRP3 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBIHDGFRP3 [Mapview hg19]  HDGFRP3 [Mapview hg38]
OMIM616643   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_016073
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HDGFRP3
Cluster EST : UnigeneHs.513954 [ NCBI ]
CGAP (NCI)Hs.513954
Alternative Splicing GalleryENSG00000166503
Gene ExpressionHDGFRP3 [ NCBI-GEO ]   HDGFRP3 [ EBI - ARRAY_EXPRESS ]   HDGFRP3 [ SEEK ]   HDGFRP3 [ MEM ]
Gene Expression Viewer (FireBrowse)HDGFRP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50810
GTEX Portal (Tissue expression)HDGFRP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3E1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3E1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3E1
Splice isoforms : SwissVarQ9Y3E1
PhosPhoSitePlusQ9Y3E1
Domaine pattern : Prosite (Expaxy)PWWP (PS50812)   
Domains : Interpro (EBI)PWWP_dom   
Domain families : Pfam (Sanger)PWWP (PF00855)   
Domain families : Pfam (NCBI)pfam00855   
Domain families : Smart (EMBL)PWWP (SM00293)  
Conserved Domain (NCBI)HDGFRP3
DMDM Disease mutations50810
Blocks (Seattle)HDGFRP3
SuperfamilyQ9Y3E1
Human Protein AtlasENSG00000166503
Peptide AtlasQ9Y3E1
HPRD17096
IPIIPI00007063   IPI00384555   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3E1
IntAct (EBI)Q9Y3E1
FunCoupENSG00000166503
BioGRIDHDGFRP3
STRING (EMBL)HDGFRP3
ZODIACHDGFRP3
Ontologies - Pathways
QuickGOQ9Y3E1
Ontology : AmiGOnucleus  nucleoplasm  cytosol  negative regulation of microtubule depolymerization  microtubule binding  growth factor activity  cell proliferation  tubulin binding  neuron projection development  microtubule polymerization  
Ontology : EGO-EBInucleus  nucleoplasm  cytosol  negative regulation of microtubule depolymerization  microtubule binding  growth factor activity  cell proliferation  tubulin binding  neuron projection development  microtubule polymerization  
NDEx NetworkHDGFRP3
Atlas of Cancer Signalling NetworkHDGFRP3
Wikipedia pathwaysHDGFRP3
Orthology - Evolution
OrthoDB50810
GeneTree (enSembl)ENSG00000166503
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ9Y3E1
HOGENOMQ9Y3E1
Homologs : HomoloGeneHDGFRP3
Homology/Alignments : Family Browser (UCSC)HDGFRP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHDGFRP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HDGFRP3
dbVarHDGFRP3
ClinVarHDGFRP3
1000_GenomesHDGFRP3 
Exome Variant ServerHDGFRP3
ExAC (Exome Aggregation Consortium)HDGFRP3 (select the gene name)
Genetic variants : HAPMAP50810
Genomic Variants (DGV)HDGFRP3 [DGVbeta]
DECIPHER (Syndromes)15:83806804-83876770  ENSG00000166503
CONAN: Copy Number AnalysisHDGFRP3 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHDGFRP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMD-
BioMutasearch HDGFRP3
DgiDB (Drug Gene Interaction Database)HDGFRP3
DoCM (Curated mutations)HDGFRP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HDGFRP3 (select a term)
intoGenHDGFRP3
Cancer3DHDGFRP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616643   
Orphanet
MedgenHDGFRP3
Genetic Testing Registry HDGFRP3
NextProtQ9Y3E1 [Medical]
TSGene50810
GENETestsHDGFRP3
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease50810
BioCentury BCIQHDGFRP3
ClinGenHDGFRP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50810
Clinical trialHDGFRP3
Miscellaneous
canSAR (ICR)HDGFRP3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHDGFRP3
EVEXHDGFRP3
GoPubMedHDGFRP3
iHOPHDGFRP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:08:46 CET 2017

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