Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HDHD3 (haloacid dehalogenase like hydrolase domain containing 3)

Identity

Alias (NCBI)2810435D12Rik
C9orf158
HGNC (Hugo) HDHD3
HGNC Alias symbMGC12904
HGNC Previous nameC9orf158
HGNC Previous namechromosome 9 open reading frame 158
 haloacid dehalogenase-like hydrolase domain containing 3
LocusID (NCBI) 81932
Atlas_Id 64218
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 113373416 and ends at 113376061 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABCA1 (9q31.1) / HDHD3 (9q32)HDHD3 (9q32) / PTBP2 (1p21.3)RBM19 (12q24.13) / HDHD3 (9q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(9;9)(q31;q32) ABCA1/HDHD3

External links

Nomenclature
HGNC (Hugo)HDHD3   28171
Cards
Entrez_Gene (NCBI)HDHD3    haloacid dehalogenase like hydrolase domain containing 3
Aliases2810435D12Rik; C9orf158
GeneCards (Weizmann)HDHD3
Ensembl hg19 (Hinxton)ENSG00000119431 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119431 [Gene_View]  ENSG00000119431 [Sequence]  chr9:113373416-113376061 [Contig_View]  HDHD3 [Vega]
ICGC DataPortalENSG00000119431
TCGA cBioPortalHDHD3
AceView (NCBI)HDHD3
Genatlas (Paris)HDHD3
SOURCE (Princeton)HDHD3
Genetics Home Reference (NIH)HDHD3
Genomic and cartography
GoldenPath hg38 (UCSC)HDHD3  -     chr9:113373416-113376061 -  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HDHD3  -     9q32   [Description]    (hg19-Feb_2009)
GoldenPathHDHD3 - 9q32 [CytoView hg19]  HDHD3 - 9q32 [CytoView hg38]
ImmunoBaseENSG00000119431
genome Data Viewer NCBIHDHD3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ420424 AK315401 AW050717 BC005048 BC031878
RefSeq transcript (Entrez)NM_001304509 NM_001304510 NM_001304511 NM_001371923 NM_031219
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HDHD3
Alternative Splicing GalleryENSG00000119431
Gene ExpressionHDHD3 [ NCBI-GEO ]   HDHD3 [ EBI - ARRAY_EXPRESS ]   HDHD3 [ SEEK ]   HDHD3 [ MEM ]
Gene Expression Viewer (FireBrowse)HDHD3 [ Firebrowse - Broad ]
GenevisibleExpression of HDHD3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81932
GTEX Portal (Tissue expression)HDHD3
Human Protein AtlasENSG00000119431-HDHD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSH5
Splice isoforms : SwissVarQ9BSH5
PhosPhoSitePlusQ9BSH5
Domains : Interpro (EBI)HAD-like_sf    HAD-SF_hydro_IA    HAD-SF_hydro_IA_REG-2-like    HAD_2    HAD_sf   
Domain families : Pfam (Sanger)HAD_2 (PF13419)   
Domain families : Pfam (NCBI)pfam13419   
Conserved Domain (NCBI)HDHD3
Blocks (Seattle)HDHD3
PDB (RSDB)3K1Z   
PDB Europe3K1Z   
PDB (PDBSum)3K1Z   
PDB (IMB)3K1Z   
Structural Biology KnowledgeBase3K1Z   
SCOP (Structural Classification of Proteins)3K1Z   
CATH (Classification of proteins structures)3K1Z   
SuperfamilyQ9BSH5
Human Protein Atlas [tissue]ENSG00000119431-HDHD3 [tissue]
Peptide AtlasQ9BSH5
HPRD13641
IPIIPI00009931   IPI00978068   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSH5
IntAct (EBI)Q9BSH5
BioGRIDHDHD3
STRING (EMBL)HDHD3
ZODIACHDHD3
Ontologies - Pathways
QuickGOQ9BSH5
Ontology : AmiGOprotein binding  nucleolus  hydrolase activity  intracellular membrane-bounded organelle  
Ontology : EGO-EBIprotein binding  nucleolus  hydrolase activity  intracellular membrane-bounded organelle  
NDEx NetworkHDHD3
Atlas of Cancer Signalling NetworkHDHD3
Wikipedia pathwaysHDHD3
Orthology - Evolution
OrthoDB81932
GeneTree (enSembl)ENSG00000119431
Phylogenetic Trees/Animal Genes : TreeFamHDHD3
HOGENOMQ9BSH5
Homologs : HomoloGeneHDHD3
Homology/Alignments : Family Browser (UCSC)HDHD3
Gene fusions - Rearrangements
Fusion : QuiverHDHD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHDHD3 [hg38]
dbVarHDHD3
ClinVarHDHD3
MonarchHDHD3
1000_GenomesHDHD3 
Exome Variant ServerHDHD3
GNOMAD BrowserENSG00000119431
Varsome BrowserHDHD3
Genomic Variants (DGV)HDHD3 [DGVbeta]
DECIPHERHDHD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHDHD3 
Mutations
ICGC Data PortalHDHD3 
TCGA Data PortalHDHD3 
Broad Tumor PortalHDHD3
OASIS PortalHDHD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHDHD3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHDHD3
Mutations and Diseases : HGMDHDHD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HDHD3
DgiDB (Drug Gene Interaction Database)HDHD3
DoCM (Curated mutations)HDHD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HDHD3 (select a term)
intoGenHDHD3
Cancer3DHDHD3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHDHD3
MedgenHDHD3
Genetic Testing Registry HDHD3
NextProtQ9BSH5 [Medical]
GENETestsHDHD3
Target ValidationHDHD3
Huge Navigator HDHD3 [HugePedia]
ClinGenHDHD3
Clinical trials, drugs, therapy
MyCancerGenomeHDHD3
Protein Interactions : CTD
Pharm GKB GenePA134868152
Clinical trialHDHD3
Miscellaneous
canSAR (ICR)HDHD3 (select the gene name)
HarmonizomeHDHD3
DataMed IndexHDHD3
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHDHD3
EVEXHDHD3
GoPubMedHDHD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:56:51 CET 2020
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