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HDHD3 (haloacid dehalogenase like hydrolase domain containing 3)

Identity

Alias_namesC9orf158
chromosome 9 open reading frame 158
haloacid dehalogenase-like hydrolase domain containing 3
Alias_symbol (synonym)MGC12904
Other alias2810435D12Rik
HGNC (Hugo) HDHD3
LocusID (NCBI) 81932
Atlas_Id 64218
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 113373416 and ends at 113377009 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABCA1 (9q31.1) / HDHD3 (9q32)HDHD3 (9q32) / PTBP2 (1p21.3)RBM19 (12q24.13) / HDHD3 (9q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HDHD3   28171
Cards
Entrez_Gene (NCBI)HDHD3  81932  haloacid dehalogenase like hydrolase domain containing 3
Aliases2810435D12Rik; C9orf158
GeneCards (Weizmann)HDHD3
Ensembl hg19 (Hinxton)ENSG00000119431 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119431 [Gene_View]  chr9:113373416-113377009 [Contig_View]  HDHD3 [Vega]
ICGC DataPortalENSG00000119431
TCGA cBioPortalHDHD3
AceView (NCBI)HDHD3
Genatlas (Paris)HDHD3
WikiGenes81932
SOURCE (Princeton)HDHD3
Genetics Home Reference (NIH)HDHD3
Genomic and cartography
GoldenPath hg38 (UCSC)HDHD3  -     chr9:113373416-113377009 -  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HDHD3  -     9q32   [Description]    (hg19-Feb_2009)
EnsemblHDHD3 - 9q32 [CytoView hg19]  HDHD3 - 9q32 [CytoView hg38]
Mapping of homologs : NCBIHDHD3 [Mapview hg19]  HDHD3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ420424 AK315401 AW050717 BC005048 BC031878
RefSeq transcript (Entrez)NM_001304509 NM_001304510 NM_001304511 NM_031219
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HDHD3
Cluster EST : UnigeneHs.7739 [ NCBI ]
CGAP (NCI)Hs.7739
Alternative Splicing GalleryENSG00000119431
Gene ExpressionHDHD3 [ NCBI-GEO ]   HDHD3 [ EBI - ARRAY_EXPRESS ]   HDHD3 [ SEEK ]   HDHD3 [ MEM ]
Gene Expression Viewer (FireBrowse)HDHD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81932
GTEX Portal (Tissue expression)HDHD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSH5
Splice isoforms : SwissVarQ9BSH5
PhosPhoSitePlusQ9BSH5
Domains : Interpro (EBI)HAD-like_dom    HAD-SF_hydro_IA    HAD-SF_hydro_IA_REG-2-like   
Domain families : Pfam (Sanger)HAD_2 (PF13419)   
Domain families : Pfam (NCBI)pfam13419   
Conserved Domain (NCBI)HDHD3
DMDM Disease mutations81932
Blocks (Seattle)HDHD3
PDB (SRS)3K1Z   
PDB (PDBSum)3K1Z   
PDB (IMB)3K1Z   
PDB (RSDB)3K1Z   
Structural Biology KnowledgeBase3K1Z   
SCOP (Structural Classification of Proteins)3K1Z   
CATH (Classification of proteins structures)3K1Z   
SuperfamilyQ9BSH5
Human Protein AtlasENSG00000119431
Peptide AtlasQ9BSH5
HPRD13641
IPIIPI00009931   IPI00978068   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSH5
IntAct (EBI)Q9BSH5
FunCoupENSG00000119431
BioGRIDHDHD3
STRING (EMBL)HDHD3
ZODIACHDHD3
Ontologies - Pathways
QuickGOQ9BSH5
Ontology : AmiGOprotein binding  mitochondrion  metabolic process  hydrolase activity  
Ontology : EGO-EBIprotein binding  mitochondrion  metabolic process  hydrolase activity  
NDEx NetworkHDHD3
Atlas of Cancer Signalling NetworkHDHD3
Wikipedia pathwaysHDHD3
Orthology - Evolution
OrthoDB81932
GeneTree (enSembl)ENSG00000119431
Phylogenetic Trees/Animal Genes : TreeFamHDHD3
HOVERGENQ9BSH5
HOGENOMQ9BSH5
Homologs : HomoloGeneHDHD3
Homology/Alignments : Family Browser (UCSC)HDHD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHDHD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HDHD3
dbVarHDHD3
ClinVarHDHD3
1000_GenomesHDHD3 
Exome Variant ServerHDHD3
ExAC (Exome Aggregation Consortium)HDHD3 (select the gene name)
Genetic variants : HAPMAP81932
Genomic Variants (DGV)HDHD3 [DGVbeta]
DECIPHERHDHD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHDHD3 
Mutations
ICGC Data PortalHDHD3 
TCGA Data PortalHDHD3 
Broad Tumor PortalHDHD3
OASIS PortalHDHD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHDHD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHDHD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HDHD3
DgiDB (Drug Gene Interaction Database)HDHD3
DoCM (Curated mutations)HDHD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HDHD3 (select a term)
intoGenHDHD3
Cancer3DHDHD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHDHD3
Genetic Testing Registry HDHD3
NextProtQ9BSH5 [Medical]
TSGene81932
GENETestsHDHD3
Target ValidationHDHD3
Huge Navigator HDHD3 [HugePedia]
snp3D : Map Gene to Disease81932
BioCentury BCIQHDHD3
ClinGenHDHD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81932
Chemical/Pharm GKB GenePA134868152
Clinical trialHDHD3
Miscellaneous
canSAR (ICR)HDHD3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHDHD3
EVEXHDHD3
GoPubMedHDHD3
iHOPHDHD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:20 CEST 2017

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