Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HDHD5-AS1 (HDHD5 antisense RNA 1)

Identity

Alias_namesCECR4
CECR5-AS1
cat eye syndrome chromosome region, candidate 4
cat eye syndrome chromosome region, candidate 4 (non-protein coding)
CECR5 antisense RNA 1 (non-protein coding)
CECR5 antisense RNA 1
Alias_symbol (synonym)NCRNA00017
Other alias
HGNC (Hugo) HDHD5-AS1
LocusID (NCBI) 100130717
Atlas_Id 79848
Location 22q11.1  [Link to chromosome band 22q11]
Location_base_pair Starts at 17159389 and ends at 17165445 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HDHD5-AS1   1842
Cards
Entrez_Gene (NCBI)HDHD5-AS1  100130717  HDHD5 antisense RNA 1
AliasesCECR4; CECR5-AS1; NCRNA00017
GeneCards (Weizmann)HDHD5-AS1
Ensembl hg19 (Hinxton)ENSG00000185837 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185837 [Gene_View]  chr22:17159389-17165445 [Contig_View]  HDHD5-AS1 [Vega]
ICGC DataPortalENSG00000185837
TCGA cBioPortalHDHD5-AS1
AceView (NCBI)HDHD5-AS1
Genatlas (Paris)HDHD5-AS1
WikiGenes100130717
SOURCE (Princeton)HDHD5-AS1
Genetics Home Reference (NIH)HDHD5-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)HDHD5-AS1  -     chr22:17159389-17165445 +  22q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HDHD5-AS1  -     22q11.1   [Description]    (hg19-Feb_2009)
EnsemblHDHD5-AS1 - 22q11.1 [CytoView hg19]  HDHD5-AS1 - 22q11.1 [CytoView hg38]
Mapping of homologs : NCBIHDHD5-AS1 [Mapview hg19]  HDHD5-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF307448 AW293178 BI962745
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HDHD5-AS1
Cluster EST : UnigeneHs.660066 [ NCBI ]
CGAP (NCI)Hs.660066
Alternative Splicing GalleryENSG00000185837
Gene ExpressionHDHD5-AS1 [ NCBI-GEO ]   HDHD5-AS1 [ EBI - ARRAY_EXPRESS ]   HDHD5-AS1 [ SEEK ]   HDHD5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)HDHD5-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100130717
GTEX Portal (Tissue expression)HDHD5-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HDHD5-AS1
DMDM Disease mutations100130717
Blocks (Seattle)HDHD5-AS1
Human Protein AtlasENSG00000185837
Protein Interaction databases
FunCoupENSG00000185837
BioGRIDHDHD5-AS1
STRING (EMBL)HDHD5-AS1
ZODIACHDHD5-AS1
Ontologies - Pathways
Huge Navigator HDHD5-AS1 [HugePedia]
snp3D : Map Gene to Disease100130717
BioCentury BCIQHDHD5-AS1
ClinGenHDHD5-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130717
Chemical/Pharm GKB GenePA26385
Clinical trialHDHD5-AS1
Miscellaneous
canSAR (ICR)HDHD5-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHDHD5-AS1
EVEXHDHD5-AS1
GoPubMedHDHD5-AS1
iHOPHDHD5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:21 CEST 2017

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