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HDX (highly divergent homeobox)

Identity

Alias_namesCXorf43
chromosome X open reading frame 43
Alias_symbol (synonym)FLJ30678
Other aliasD030011N01Rik
HGNC (Hugo) HDX
LocusID (NCBI) 139324
Atlas_Id 64219
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 84317874 and ends at 84502479 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPS6KA6 (Xq21.1) / HDX (Xq21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HDX   26411
Cards
Entrez_Gene (NCBI)HDX  139324  highly divergent homeobox
AliasesCXorf43; D030011N01Rik
GeneCards (Weizmann)HDX
Ensembl hg19 (Hinxton)ENSG00000165259 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165259 [Gene_View]  chrX:84317874-84502479 [Contig_View]  HDX [Vega]
ICGC DataPortalENSG00000165259
TCGA cBioPortalHDX
AceView (NCBI)HDX
Genatlas (Paris)HDX
WikiGenes139324
SOURCE (Princeton)HDX
Genetics Home Reference (NIH)HDX
Genomic and cartography
GoldenPath hg38 (UCSC)HDX  -     chrX:84317874-84502479 -  Xq21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HDX  -     Xq21.1   [Description]    (hg19-Feb_2009)
EnsemblHDX - Xq21.1 [CytoView hg19]  HDX - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBIHDX [Mapview hg19]  HDX [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055240 AK290050 BC101720 BC101722 BC143522
RefSeq transcript (Entrez)NM_001177478 NM_001177479 NM_144657
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HDX
Cluster EST : UnigeneHs.559546 [ NCBI ]
CGAP (NCI)Hs.559546
Alternative Splicing GalleryENSG00000165259
Gene ExpressionHDX [ NCBI-GEO ]   HDX [ EBI - ARRAY_EXPRESS ]   HDX [ SEEK ]   HDX [ MEM ]
Gene Expression Viewer (FireBrowse)HDX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer] nbsp,A HREF=https://genevisible.com//perturbations/HS/UniProt/Q7Z353 TARGET=perturbations>[perturbations]  
BioGPS (Tissue expression)139324
GTEX Portal (Tissue expression)HDX
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z353   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z353  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z353
Splice isoforms : SwissVarQ7Z353
PhosPhoSitePlusQ7Z353
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)HDX
DMDM Disease mutations139324
Blocks (Seattle)HDX
PDB (SRS)2DA4   
PDB (PDBSum)2DA4   
PDB (IMB)2DA4   
PDB (RSDB)2DA4   
Structural Biology KnowledgeBase2DA4   
SCOP (Structural Classification of Proteins)2DA4   
CATH (Classification of proteins structures)2DA4   
SuperfamilyQ7Z353
Human Protein AtlasENSG00000165259
Peptide AtlasQ7Z353
HPRD06550
IPIIPI00646961   IPI00401789   IPI01013279   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z353
IntAct (EBI)Q7Z353
FunCoupENSG00000165259
BioGRIDHDX
STRING (EMBL)HDX
ZODIACHDX
Ontologies - Pathways
QuickGOQ7Z353
Ontology : AmiGODNA binding  nucleus  
Ontology : EGO-EBIDNA binding  nucleus  
NDEx NetworkHDX
Atlas of Cancer Signalling NetworkHDX
Wikipedia pathwaysHDX
Orthology - Evolution
OrthoDB139324
GeneTree (enSembl)ENSG00000165259
Phylogenetic Trees/Animal Genes : TreeFamHDX
HOVERGENQ7Z353
HOGENOMQ7Z353
Homologs : HomoloGeneHDX
Homology/Alignments : Family Browser (UCSC)HDX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHDX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HDX
dbVarHDX
ClinVarHDX
1000_GenomesHDX 
Exome Variant ServerHDX
ExAC (Exome Aggregation Consortium)HDX (select the gene name)
Genetic variants : HAPMAP139324
Genomic Variants (DGV)HDX [DGVbeta]
DECIPHERHDX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHDX 
Mutations
ICGC Data PortalHDX 
TCGA Data PortalHDX 
Broad Tumor PortalHDX
OASIS PortalHDX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHDX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHDX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch HDX
DgiDB (Drug Gene Interaction Database)HDX
DoCM (Curated mutations)HDX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HDX (select a term)
intoGenHDX
Cancer3DHDX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHDX
Genetic Testing Registry HDX
NextProtQ7Z353 [Medical]
TSGene139324
GENETestsHDX
Target ValidationHDX
Huge Navigator HDX [HugePedia]
snp3D : Map Gene to Disease139324
BioCentury BCIQHDX
ClinGenHDX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139324
Chemical/Pharm GKB GenePA162390630
Clinical trialHDX
Miscellaneous
canSAR (ICR)HDX (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHDX
EVEXHDX
GoPubMedHDX
iHOPHDX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:21 CEST 2017

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