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HEATR3 (HEAT repeat containing 3)

Identity

Alias_symbol (synonym)FLJ20718
Other aliasSYO1
HGNC (Hugo) HEATR3
LocusID (NCBI) 55027
Atlas_Id 54355
Location 16q12.1  [Link to chromosome band 16q12]
Location_base_pair Starts at 50065941 and ends at 50107272 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HEATR3 (16q12.1) / CHRNB3 (8p11.21)HEATR3 (16q12.1) / HEATR3 (16q12.1)PPP4R3A (14q32.12) / HEATR3 (16q12.1)
HEATR3 16q12.1 / CHRNB3 8p11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)HEATR3   26087
Cards
Entrez_Gene (NCBI)HEATR3  55027  HEAT repeat containing 3
AliasesSYO1
GeneCards (Weizmann)HEATR3
Ensembl hg19 (Hinxton)ENSG00000155393 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155393 [Gene_View]  chr16:50065941-50107272 [Contig_View]  HEATR3 [Vega]
ICGC DataPortalENSG00000155393
TCGA cBioPortalHEATR3
AceView (NCBI)HEATR3
Genatlas (Paris)HEATR3
WikiGenes55027
SOURCE (Princeton)HEATR3
Genetics Home Reference (NIH)HEATR3
Genomic and cartography
GoldenPath hg38 (UCSC)HEATR3  -     chr16:50065941-50107272 +  16q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HEATR3  -     16q12.1   [Description]    (hg19-Feb_2009)
EnsemblHEATR3 - 16q12.1 [CytoView hg19]  HEATR3 - 16q12.1 [CytoView hg38]
Mapping of homologs : NCBIHEATR3 [Mapview hg19]  HEATR3 [Mapview hg38]
OMIM614951   
Gene and transcription
Genbank (Entrez)AF462442 AK000725 AK289949 BC014415 BC018730
RefSeq transcript (Entrez)NM_001329729 NM_001329730 NM_001329731 NM_017939 NM_182922
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HEATR3
Cluster EST : UnigeneHs.733027 [ NCBI ]
CGAP (NCI)Hs.733027
Alternative Splicing GalleryENSG00000155393
Gene ExpressionHEATR3 [ NCBI-GEO ]   HEATR3 [ EBI - ARRAY_EXPRESS ]   HEATR3 [ SEEK ]   HEATR3 [ MEM ]
Gene Expression Viewer (FireBrowse)HEATR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55027
GTEX Portal (Tissue expression)HEATR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4Q2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4Q2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4Q2
Splice isoforms : SwissVarQ7Z4Q2
PhosPhoSitePlusQ7Z4Q2
Domains : Interpro (EBI)ARM-like    ARM-type_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HEATR3
DMDM Disease mutations55027
Blocks (Seattle)HEATR3
SuperfamilyQ7Z4Q2
Human Protein AtlasENSG00000155393
Peptide AtlasQ7Z4Q2
HPRD07945
IPIIPI00100984   IPI00155577   IPI00409555   IPI00883671   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4Q2
IntAct (EBI)Q7Z4Q2
FunCoupENSG00000155393
BioGRIDHEATR3
STRING (EMBL)HEATR3
ZODIACHEATR3
Ontologies - Pathways
QuickGOQ7Z4Q2
Ontology : AmiGOintracellular  protein import into nucleus  ribosomal large subunit biogenesis  unfolded protein binding  
Ontology : EGO-EBIintracellular  protein import into nucleus  ribosomal large subunit biogenesis  unfolded protein binding  
NDEx NetworkHEATR3
Atlas of Cancer Signalling NetworkHEATR3
Wikipedia pathwaysHEATR3
Orthology - Evolution
OrthoDB55027
GeneTree (enSembl)ENSG00000155393
Phylogenetic Trees/Animal Genes : TreeFamHEATR3
HOVERGENQ7Z4Q2
HOGENOMQ7Z4Q2
Homologs : HomoloGeneHEATR3
Homology/Alignments : Family Browser (UCSC)HEATR3
Gene fusions - Rearrangements
Fusion : MitelmanHEATR3/CHRNB3 [16q12.1/8p11.21]  
Fusion : MitelmanSMEK1/16q12.1 [HEATR3/t(14;16)(q32;q12)]  
Fusion: TCGAHEATR3 16q12.1 CHRNB3 8p11.21 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHEATR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HEATR3
dbVarHEATR3
ClinVarHEATR3
1000_GenomesHEATR3 
Exome Variant ServerHEATR3
ExAC (Exome Aggregation Consortium)HEATR3 (select the gene name)
Genetic variants : HAPMAP55027
Genomic Variants (DGV)HEATR3 [DGVbeta]
DECIPHERHEATR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHEATR3 
Mutations
ICGC Data PortalHEATR3 
TCGA Data PortalHEATR3 
Broad Tumor PortalHEATR3
OASIS PortalHEATR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHEATR3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHEATR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HEATR3
DgiDB (Drug Gene Interaction Database)HEATR3
DoCM (Curated mutations)HEATR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HEATR3 (select a term)
intoGenHEATR3
Cancer3DHEATR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614951   
Orphanet
MedgenHEATR3
Genetic Testing Registry HEATR3
NextProtQ7Z4Q2 [Medical]
TSGene55027
GENETestsHEATR3
Huge Navigator HEATR3 [HugePedia]
snp3D : Map Gene to Disease55027
BioCentury BCIQHEATR3
ClinGenHEATR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55027
Chemical/Pharm GKB GenePA144596426
Clinical trialHEATR3
Miscellaneous
canSAR (ICR)HEATR3 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHEATR3
EVEXHEATR3
GoPubMedHEATR3
iHOPHEATR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:18:34 CEST 2017

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