Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HEATR4 (HEAT repeat containing 4)

Identity

Alias_symbol (synonym)MGC48595
Other alias-
HGNC (Hugo) HEATR4
LocusID (NCBI) 399671
Atlas_Id 64222
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 73478484 and ends at 73558947 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HEATR4   16761
Cards
Entrez_Gene (NCBI)HEATR4  399671  HEAT repeat containing 4
Aliases
GeneCards (Weizmann)HEATR4
Ensembl hg19 (Hinxton)ENSG00000187105 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187105 [Gene_View]  chr14:73478484-73558947 [Contig_View]  HEATR4 [Vega]
ICGC DataPortalENSG00000187105
TCGA cBioPortalHEATR4
AceView (NCBI)HEATR4
Genatlas (Paris)HEATR4
WikiGenes399671
SOURCE (Princeton)HEATR4
Genetics Home Reference (NIH)HEATR4
Genomic and cartography
GoldenPath hg38 (UCSC)HEATR4  -     chr14:73478484-73558947 -  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HEATR4  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblHEATR4 - 14q24.3 [CytoView hg19]  HEATR4 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIHEATR4 [Mapview hg19]  HEATR4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093515 AK302564 BC047590 GU727638
RefSeq transcript (Entrez)NM_001220484 NM_203309
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HEATR4
Cluster EST : UnigeneHs.660774 [ NCBI ]
CGAP (NCI)Hs.660774
Alternative Splicing GalleryENSG00000187105
Gene ExpressionHEATR4 [ NCBI-GEO ]   HEATR4 [ EBI - ARRAY_EXPRESS ]   HEATR4 [ SEEK ]   HEATR4 [ MEM ]
Gene Expression Viewer (FireBrowse)HEATR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399671
GTEX Portal (Tissue expression)HEATR4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WZ0
Splice isoforms : SwissVarQ86WZ0
PhosPhoSitePlusQ86WZ0
Domains : Interpro (EBI)ARM-like    ARM-type_fold    HEAT   
Domain families : Pfam (Sanger)HEAT (PF02985)   
Domain families : Pfam (NCBI)pfam02985   
Conserved Domain (NCBI)HEATR4
DMDM Disease mutations399671
Blocks (Seattle)HEATR4
SuperfamilyQ86WZ0
Human Protein AtlasENSG00000187105
Peptide AtlasQ86WZ0
HPRD14657
IPIIPI00384508   IPI01026324   IPI01025984   IPI01025197   
Protein Interaction databases
DIP (DOE-UCLA)Q86WZ0
IntAct (EBI)Q86WZ0
FunCoupENSG00000187105
BioGRIDHEATR4
STRING (EMBL)HEATR4
ZODIACHEATR4
Ontologies - Pathways
QuickGOQ86WZ0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkHEATR4
Atlas of Cancer Signalling NetworkHEATR4
Wikipedia pathwaysHEATR4
Orthology - Evolution
OrthoDB399671
GeneTree (enSembl)ENSG00000187105
Phylogenetic Trees/Animal Genes : TreeFamHEATR4
HOVERGENQ86WZ0
HOGENOMQ86WZ0
Homologs : HomoloGeneHEATR4
Homology/Alignments : Family Browser (UCSC)HEATR4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHEATR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HEATR4
dbVarHEATR4
ClinVarHEATR4
1000_GenomesHEATR4 
Exome Variant ServerHEATR4
ExAC (Exome Aggregation Consortium)HEATR4 (select the gene name)
Genetic variants : HAPMAP399671
Genomic Variants (DGV)HEATR4 [DGVbeta]
DECIPHERHEATR4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHEATR4 
Mutations
ICGC Data PortalHEATR4 
TCGA Data PortalHEATR4 
Broad Tumor PortalHEATR4
OASIS PortalHEATR4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHEATR4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHEATR4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HEATR4
DgiDB (Drug Gene Interaction Database)HEATR4
DoCM (Curated mutations)HEATR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HEATR4 (select a term)
intoGenHEATR4
Cancer3DHEATR4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHEATR4
Genetic Testing Registry HEATR4
NextProtQ86WZ0 [Medical]
TSGene399671
GENETestsHEATR4
Target ValidationHEATR4
Huge Navigator HEATR4 [HugePedia]
snp3D : Map Gene to Disease399671
BioCentury BCIQHEATR4
ClinGenHEATR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399671
Chemical/Pharm GKB GenePA162390631
Clinical trialHEATR4
Miscellaneous
canSAR (ICR)HEATR4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHEATR4
EVEXHEATR4
GoPubMedHEATR4
iHOPHEATR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:52:09 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.