Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HEATR5B (HEAT repeat containing 5B)

Identity

Alias_symbol (synonym)KIAA1414
DKFZp686P15184
Other alias-
HGNC (Hugo) HEATR5B
LocusID (NCBI) 54497
Atlas_Id 64223
Location 2p22.2  [Link to chromosome band 2p22]
Location_base_pair Starts at 36981001 and ends at 37084345 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HEATR5B (2p22.2) / KIF13A (6p22.3)HEATR5B (2p22.2) / MRPL27 (17q21.33)HEATR5B (2p22.2) / MYB (6q23.3)
HEATR5B (2p22.2) / TBL1X (Xp22.31)NFIB (9p23) / HEATR5B (2p22.2)STRN (2p22.2) / HEATR5B (2p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HEATR5B   29273
Cards
Entrez_Gene (NCBI)HEATR5B  54497  HEAT repeat containing 5B
Aliases
GeneCards (Weizmann)HEATR5B
Ensembl hg19 (Hinxton)ENSG00000008869 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000008869 [Gene_View]  chr2:36981001-37084345 [Contig_View]  HEATR5B [Vega]
ICGC DataPortalENSG00000008869
TCGA cBioPortalHEATR5B
AceView (NCBI)HEATR5B
Genatlas (Paris)HEATR5B
WikiGenes54497
SOURCE (Princeton)HEATR5B
Genetics Home Reference (NIH)HEATR5B
Genomic and cartography
GoldenPath hg38 (UCSC)HEATR5B  -     chr2:36981001-37084345 -  2p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HEATR5B  -     2p22.2   [Description]    (hg19-Feb_2009)
EnsemblHEATR5B - 2p22.2 [CytoView hg19]  HEATR5B - 2p22.2 [CytoView hg38]
Mapping of homologs : NCBIHEATR5B [Mapview hg19]  HEATR5B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037835 AK001513 AK026928 AK096637 AL832880
RefSeq transcript (Entrez)NM_019024
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HEATR5B
Cluster EST : UnigeneHs.744084 [ NCBI ]
CGAP (NCI)Hs.744084
Alternative Splicing GalleryENSG00000008869
Gene ExpressionHEATR5B [ NCBI-GEO ]   HEATR5B [ EBI - ARRAY_EXPRESS ]   HEATR5B [ SEEK ]   HEATR5B [ MEM ]
Gene Expression Viewer (FireBrowse)HEATR5B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54497
GTEX Portal (Tissue expression)HEATR5B
Human Protein AtlasENSG00000008869-HEATR5B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2D3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2D3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2D3
Splice isoforms : SwissVarQ9P2D3
PhosPhoSitePlusQ9P2D3
Domains : Interpro (EBI)ARM-like    ARM-type_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HEATR5B
DMDM Disease mutations54497
Blocks (Seattle)HEATR5B
SuperfamilyQ9P2D3
Human Protein Atlas [tissue]ENSG00000008869-HEATR5B [tissue]
Peptide AtlasQ9P2D3
HPRD11145
IPIIPI00479069   IPI00877102   IPI00333696   IPI00893249   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2D3
IntAct (EBI)Q9P2D3
FunCoupENSG00000008869
BioGRIDHEATR5B
STRING (EMBL)HEATR5B
ZODIACHEATR5B
Ontologies - Pathways
QuickGOQ9P2D3
Ontology : AmiGOmembrane  extracellular exosome  
Ontology : EGO-EBImembrane  extracellular exosome  
NDEx NetworkHEATR5B
Atlas of Cancer Signalling NetworkHEATR5B
Wikipedia pathwaysHEATR5B
Orthology - Evolution
OrthoDB54497
GeneTree (enSembl)ENSG00000008869
Phylogenetic Trees/Animal Genes : TreeFamHEATR5B
HOVERGENQ9P2D3
HOGENOMQ9P2D3
Homologs : HomoloGeneHEATR5B
Homology/Alignments : Family Browser (UCSC)HEATR5B
Gene fusions - Rearrangements
Tumor Fusion PortalHEATR5B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHEATR5B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HEATR5B
dbVarHEATR5B
ClinVarHEATR5B
1000_GenomesHEATR5B 
Exome Variant ServerHEATR5B
ExAC (Exome Aggregation Consortium)ENSG00000008869
GNOMAD BrowserENSG00000008869
Genetic variants : HAPMAP54497
Genomic Variants (DGV)HEATR5B [DGVbeta]
DECIPHERHEATR5B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHEATR5B 
Mutations
ICGC Data PortalHEATR5B 
TCGA Data PortalHEATR5B 
Broad Tumor PortalHEATR5B
OASIS PortalHEATR5B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHEATR5B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHEATR5B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HEATR5B
DgiDB (Drug Gene Interaction Database)HEATR5B
DoCM (Curated mutations)HEATR5B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HEATR5B (select a term)
intoGenHEATR5B
Cancer3DHEATR5B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHEATR5B
MedgenHEATR5B
Genetic Testing Registry HEATR5B
NextProtQ9P2D3 [Medical]
TSGene54497
GENETestsHEATR5B
Target ValidationHEATR5B
Huge Navigator HEATR5B [HugePedia]
snp3D : Map Gene to Disease54497
BioCentury BCIQHEATR5B
ClinGenHEATR5B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54497
Chemical/Pharm GKB GenePA162390697
Clinical trialHEATR5B
Miscellaneous
canSAR (ICR)HEATR5B (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHEATR5B
EVEXHEATR5B
GoPubMedHEATR5B
iHOPHEATR5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:32:42 CET 2017

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