Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HEATR6 (HEAT repeat containing 6)

Identity

Alias_symbol (synonym)ABC1
FLJ22087
Other alias
HGNC (Hugo) HEATR6
LocusID (NCBI) 63897
Atlas_Id 536
Location 17q23.1  [Link to chromosome band 17q23]
Location_base_pair Starts at 60043191 and ends at 60078931 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HEATR6 (17q23.1) / C17orf64 (17q23.2)HEATR6 (17q23.1) / FGF10 (5p12)HEATR6 (17q23.1) / GALNT13 (2q23.3)
HEATR6 (17q23.1) / WEE1 (11p15.4)SH3BP5 (3p25.1) / HEATR6 (17q23.1)TOP3A (17p11.2) / HEATR6 (17q23.1)
TUBD1 (17q23.1) / HEATR6 (17q23.1)YPEL2 (17q22) / HEATR6 (17q23.1)HEATR6 17q23.1 / C17orf64 17q23.2
HEATR6 17q23.1 / FGF10 5p12HEATR6 17q23.1 / GALNT13 2q23.3HEATR6 17q23.1 / WEE1 11p15.4
SH3BP5 3p25.1 / HEATR6 17q23.1TOP3A 17p11.2 / HEATR6 17q23.1TUBD1 17q23.1 / HEATR6 17q23.1
YPEL2 17q22 / HEATR6 17q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HEATR6   24076
Cards
Entrez_Gene (NCBI)HEATR6  63897  HEAT repeat containing 6
AliasesABC1
GeneCards (Weizmann)HEATR6
Ensembl hg19 (Hinxton)ENSG00000068097 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000068097 [Gene_View]  chr17:60043191-60078931 [Contig_View]  HEATR6 [Vega]
ICGC DataPortalENSG00000068097
TCGA cBioPortalHEATR6
AceView (NCBI)HEATR6
Genatlas (Paris)HEATR6
WikiGenes63897
SOURCE (Princeton)HEATR6
Genetics Home Reference (NIH)HEATR6
Genomic and cartography
GoldenPath hg38 (UCSC)HEATR6  -     chr17:60043191-60078931 -  17q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HEATR6  -     17q23.1   [Description]    (hg19-Feb_2009)
EnsemblHEATR6 - 17q23.1 [CytoView hg19]  HEATR6 - 17q23.1 [CytoView hg38]
Mapping of homologs : NCBIHEATR6 [Mapview hg19]  HEATR6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF349752 AK025740 AK026070 AK127708 AK314655
RefSeq transcript (Entrez)NM_022070
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HEATR6
Cluster EST : UnigeneHs.591183 [ NCBI ]
CGAP (NCI)Hs.591183
Alternative Splicing GalleryENSG00000068097
Gene ExpressionHEATR6 [ NCBI-GEO ]   HEATR6 [ EBI - ARRAY_EXPRESS ]   HEATR6 [ SEEK ]   HEATR6 [ MEM ]
Gene Expression Viewer (FireBrowse)HEATR6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63897
GTEX Portal (Tissue expression)HEATR6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6AI08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6AI08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6AI08
Splice isoforms : SwissVarQ6AI08
PhosPhoSitePlusQ6AI08
Domains : Interpro (EBI)ARM-like    ARM-type_fold    DUF4042   
Domain families : Pfam (Sanger)DUF4042 (PF13251)   
Domain families : Pfam (NCBI)pfam13251   
Conserved Domain (NCBI)HEATR6
DMDM Disease mutations63897
Blocks (Seattle)HEATR6
SuperfamilyQ6AI08
Human Protein AtlasENSG00000068097
Peptide AtlasQ6AI08
HPRD12399
IPIIPI00464999   IPI00784697   
Protein Interaction databases
DIP (DOE-UCLA)Q6AI08
IntAct (EBI)Q6AI08
FunCoupENSG00000068097
BioGRIDHEATR6
STRING (EMBL)HEATR6
ZODIACHEATR6
Ontologies - Pathways
QuickGOQ6AI08
Ontology : AmiGORNA binding  
Ontology : EGO-EBIRNA binding  
NDEx NetworkHEATR6
Atlas of Cancer Signalling NetworkHEATR6
Wikipedia pathwaysHEATR6
Orthology - Evolution
OrthoDB63897
GeneTree (enSembl)ENSG00000068097
Phylogenetic Trees/Animal Genes : TreeFamHEATR6
HOVERGENQ6AI08
HOGENOMQ6AI08
Homologs : HomoloGeneHEATR6
Homology/Alignments : Family Browser (UCSC)HEATR6
Gene fusions - Rearrangements
Fusion : MitelmanHEATR6/C17orf64 [17q23.1/17q23.2]  
Fusion : MitelmanHEATR6/FGF10 [17q23.1/5p12]  [t(5;17)(p12;q23)]  
Fusion : MitelmanHEATR6/GALNT13 [17q23.1/2q23.3]  [t(2;17)(q23;q23)]  
Fusion : MitelmanHEATR6/WEE1 [17q23.1/11p15.4]  [t(11;17)(p15;q23)]  
Fusion : MitelmanSH3BP5/HEATR6 [3p25.1/17q23.1]  [t(3;17)(p25;q23)]  
Fusion : MitelmanTOP3A/HEATR6 [17p11.2/17q23.1]  [t(17;17)(p11;q23)]  
Fusion : MitelmanTUBD1/HEATR6 [17q23.1/17q23.1]  [t(17;17)(q23;q23)]  
Fusion : MitelmanYPEL2/HEATR6 [17q22/17q23.1]  [t(17;17)(q22;q23)]  
Fusion: TCGAHEATR6 17q23.1 C17orf64 17q23.2 BRCA
Fusion: TCGAHEATR6 17q23.1 FGF10 5p12 BRCA
Fusion: TCGAHEATR6 17q23.1 GALNT13 2q23.3 BRCA
Fusion: TCGAHEATR6 17q23.1 WEE1 11p15.4 BRCA
Fusion: TCGASH3BP5 3p25.1 HEATR6 17q23.1 BRCA
Fusion: TCGATOP3A 17p11.2 HEATR6 17q23.1 BRCA
Fusion: TCGATUBD1 17q23.1 HEATR6 17q23.1 BRCA
Fusion: TCGAYPEL2 17q22 HEATR6 17q23.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHEATR6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HEATR6
dbVarHEATR6
ClinVarHEATR6
1000_GenomesHEATR6 
Exome Variant ServerHEATR6
ExAC (Exome Aggregation Consortium)HEATR6 (select the gene name)
Genetic variants : HAPMAP63897
Genomic Variants (DGV)HEATR6 [DGVbeta]
DECIPHERHEATR6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHEATR6 
Mutations
ICGC Data PortalHEATR6 
TCGA Data PortalHEATR6 
Broad Tumor PortalHEATR6
OASIS PortalHEATR6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHEATR6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHEATR6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HEATR6
DgiDB (Drug Gene Interaction Database)HEATR6
DoCM (Curated mutations)HEATR6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HEATR6 (select a term)
intoGenHEATR6
Cancer3DHEATR6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHEATR6
Genetic Testing Registry HEATR6
NextProtQ6AI08 [Medical]
TSGene63897
GENETestsHEATR6
Target ValidationHEATR6
Huge Navigator HEATR6 [HugePedia]
snp3D : Map Gene to Disease63897
BioCentury BCIQHEATR6
ClinGenHEATR6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63897
Chemical/Pharm GKB GenePA162390774
Clinical trialHEATR6
Miscellaneous
canSAR (ICR)HEATR6 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHEATR6
EVEXHEATR6
GoPubMedHEATR6
iHOPHEATR6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:36:35 CEST 2017

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