Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HEATR9 (HEAT repeat containing 9)

Identity

Alias_namesC17orf66
chromosome 17 open reading frame 66
Alias_symbol (synonym)FLJ32830
Other alias
HGNC (Hugo) HEATR9
LocusID (NCBI) 256957
Atlas_Id 64224
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 35854946 and ends at 35868891 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HEATR9   26548
Cards
Entrez_Gene (NCBI)HEATR9  256957  HEAT repeat containing 9
AliasesC17orf66
GeneCards (Weizmann)HEATR9
Ensembl hg19 (Hinxton)ENSG00000270379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000270379 [Gene_View]  chr17:35854946-35868891 [Contig_View]  HEATR9 [Vega]
ICGC DataPortalENSG00000270379
TCGA cBioPortalHEATR9
AceView (NCBI)HEATR9
Genatlas (Paris)HEATR9
WikiGenes256957
SOURCE (Princeton)HEATR9
Genetics Home Reference (NIH)HEATR9
Genomic and cartography
GoldenPath hg38 (UCSC)HEATR9  -     chr17:35854946-35868891 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HEATR9  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblHEATR9 - 17q12 [CytoView hg19]  HEATR9 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIHEATR9 [Mapview hg19]  HEATR9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057392 AK301774 AK301884 AK301943 BC033734
RefSeq transcript (Entrez)NM_001321395 NM_152781
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_187614
Consensus coding sequences : CCDS (NCBI)HEATR9
Cluster EST : UnigeneHs.514820 [ NCBI ]
CGAP (NCI)Hs.514820
Alternative Splicing GalleryENSG00000270379
Gene ExpressionHEATR9 [ NCBI-GEO ]   HEATR9 [ EBI - ARRAY_EXPRESS ]   HEATR9 [ SEEK ]   HEATR9 [ MEM ]
Gene Expression Viewer (FireBrowse)HEATR9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256957
GTEX Portal (Tissue expression)HEATR9
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2RTY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2RTY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2RTY3
Splice isoforms : SwissVarA2RTY3
PhosPhoSitePlusA2RTY3
Domains : Interpro (EBI)ARM-like    ARM-type_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HEATR9
DMDM Disease mutations256957
Blocks (Seattle)HEATR9
SuperfamilyA2RTY3
Human Protein AtlasENSG00000270379
Peptide AtlasA2RTY3
HPRD08142
IPIIPI00065287   IPI00384289   IPI00910439   IPI00922651   IPI00922721   
Protein Interaction databases
DIP (DOE-UCLA)A2RTY3
IntAct (EBI)A2RTY3
FunCoupENSG00000270379
BioGRIDHEATR9
STRING (EMBL)HEATR9
ZODIACHEATR9
Ontologies - Pathways
QuickGOA2RTY3
Ontology : AmiGOhematopoietic progenitor cell differentiation  
Ontology : EGO-EBIhematopoietic progenitor cell differentiation  
NDEx NetworkHEATR9
Atlas of Cancer Signalling NetworkHEATR9
Wikipedia pathwaysHEATR9
Orthology - Evolution
OrthoDB256957
GeneTree (enSembl)ENSG00000270379
Phylogenetic Trees/Animal Genes : TreeFamHEATR9
HOVERGENA2RTY3
HOGENOMA2RTY3
Homologs : HomoloGeneHEATR9
Homology/Alignments : Family Browser (UCSC)HEATR9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHEATR9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HEATR9
dbVarHEATR9
ClinVarHEATR9
1000_GenomesHEATR9 
Exome Variant ServerHEATR9
ExAC (Exome Aggregation Consortium)HEATR9 (select the gene name)
Genetic variants : HAPMAP256957
Genomic Variants (DGV)HEATR9 [DGVbeta]
DECIPHERHEATR9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHEATR9 
Mutations
ICGC Data PortalHEATR9 
TCGA Data PortalHEATR9 
Broad Tumor PortalHEATR9
OASIS PortalHEATR9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHEATR9
BioMutasearch HEATR9
DgiDB (Drug Gene Interaction Database)HEATR9
DoCM (Curated mutations)HEATR9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HEATR9 (select a term)
intoGenHEATR9
Cancer3DHEATR9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHEATR9
Genetic Testing Registry HEATR9
NextProtA2RTY3 [Medical]
TSGene256957
GENETestsHEATR9
Target ValidationHEATR9
Huge Navigator HEATR9 [HugePedia]
snp3D : Map Gene to Disease256957
BioCentury BCIQHEATR9
ClinGenHEATR9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256957
Chemical/Pharm GKB GenePA142672249
Clinical trialHEATR9
Miscellaneous
canSAR (ICR)HEATR9 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHEATR9
EVEXHEATR9
GoPubMedHEATR9
iHOPHEATR9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:52:09 CEST 2017

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