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HENMT1 (HEN1 methyltransferase homolog 1)

Identity

Alias_namesC1orf59
chromosome 1 open reading frame 59
HEN1 methyltransferase homolog 1 (Arabidopsis)
Alias_symbol (synonym)FLJ30525
HEN1
Other alias
HGNC (Hugo) HENMT1
LocusID (NCBI) 113802
Atlas_Id 64236
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 108648288 and ends at 108661122 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PHACTR4 (1p35.3) / HENMT1 (1p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HENMT1   26400
Cards
Entrez_Gene (NCBI)HENMT1  113802  HEN1 methyltransferase homolog 1
AliasesC1orf59; HEN1
GeneCards (Weizmann)HENMT1
Ensembl hg19 (Hinxton)ENSG00000162639 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162639 [Gene_View]  chr1:108648288-108661122 [Contig_View]  HENMT1 [Vega]
ICGC DataPortalENSG00000162639
TCGA cBioPortalHENMT1
AceView (NCBI)HENMT1
Genatlas (Paris)HENMT1
WikiGenes113802
SOURCE (Princeton)HENMT1
Genetics Home Reference (NIH)HENMT1
Genomic and cartography
GoldenPath hg38 (UCSC)HENMT1  -     chr1:108648288-108661122 -  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HENMT1  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblHENMT1 - 1p13.3 [CytoView hg19]  HENMT1 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBIHENMT1 [Mapview hg19]  HENMT1 [Mapview hg38]
OMIM612178   
Gene and transcription
Genbank (Entrez)AK055087 AK310152 AK311542 BC012198 BC088366
RefSeq transcript (Entrez)NM_001102592 NM_144584
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HENMT1
Cluster EST : UnigeneHs.7962 [ NCBI ]
CGAP (NCI)Hs.7962
Alternative Splicing GalleryENSG00000162639
Gene ExpressionHENMT1 [ NCBI-GEO ]   HENMT1 [ EBI - ARRAY_EXPRESS ]   HENMT1 [ SEEK ]   HENMT1 [ MEM ]
Gene Expression Viewer (FireBrowse)HENMT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113802
GTEX Portal (Tissue expression)HENMT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T8I9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T8I9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T8I9
Splice isoforms : SwissVarQ5T8I9
PhosPhoSitePlusQ5T8I9
Domains : Interpro (EBI)Hen1    SAM-dependent_MTases   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HENMT1
DMDM Disease mutations113802
Blocks (Seattle)HENMT1
PDB (SRS)4XCX   
PDB (PDBSum)4XCX   
PDB (IMB)4XCX   
PDB (RSDB)4XCX   
Structural Biology KnowledgeBase4XCX   
SCOP (Structural Classification of Proteins)4XCX   
CATH (Classification of proteins structures)4XCX   
SuperfamilyQ5T8I9
Human Protein AtlasENSG00000162639
Peptide AtlasQ5T8I9
HPRD08086
IPIIPI00304877   IPI00647427   IPI00514696   
Protein Interaction databases
DIP (DOE-UCLA)Q5T8I9
IntAct (EBI)Q5T8I9
FunCoupENSG00000162639
BioGRIDHENMT1
STRING (EMBL)HENMT1
ZODIACHENMT1
Ontologies - Pathways
QuickGOQ5T8I9
Ontology : AmiGORNA methylation  RNA binding  protein binding  O-methyltransferase activity  RNA methyltransferase activity  gene silencing by RNA  piRNA metabolic process  P granule  metal ion binding  
Ontology : EGO-EBIRNA methylation  RNA binding  protein binding  O-methyltransferase activity  RNA methyltransferase activity  gene silencing by RNA  piRNA metabolic process  P granule  metal ion binding  
NDEx NetworkHENMT1
Atlas of Cancer Signalling NetworkHENMT1
Wikipedia pathwaysHENMT1
Orthology - Evolution
OrthoDB113802
GeneTree (enSembl)ENSG00000162639
Phylogenetic Trees/Animal Genes : TreeFamHENMT1
HOVERGENQ5T8I9
HOGENOMQ5T8I9
Homologs : HomoloGeneHENMT1
Homology/Alignments : Family Browser (UCSC)HENMT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHENMT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HENMT1
dbVarHENMT1
ClinVarHENMT1
1000_GenomesHENMT1 
Exome Variant ServerHENMT1
ExAC (Exome Aggregation Consortium)HENMT1 (select the gene name)
Genetic variants : HAPMAP113802
Genomic Variants (DGV)HENMT1 [DGVbeta]
DECIPHERHENMT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHENMT1 
Mutations
ICGC Data PortalHENMT1 
TCGA Data PortalHENMT1 
Broad Tumor PortalHENMT1
OASIS PortalHENMT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHENMT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHENMT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HENMT1
DgiDB (Drug Gene Interaction Database)HENMT1
DoCM (Curated mutations)HENMT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HENMT1 (select a term)
intoGenHENMT1
Cancer3DHENMT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612178   
Orphanet
MedgenHENMT1
Genetic Testing Registry HENMT1
NextProtQ5T8I9 [Medical]
TSGene113802
GENETestsHENMT1
Target ValidationHENMT1
Huge Navigator HENMT1 [HugePedia]
snp3D : Map Gene to Disease113802
BioCentury BCIQHENMT1
ClinGenHENMT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113802
Chemical/Pharm GKB GenePA128394748
Clinical trialHENMT1
Miscellaneous
canSAR (ICR)HENMT1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHENMT1
EVEXHENMT1
GoPubMedHENMT1
iHOPHENMT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:23 CEST 2017

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