Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HEPACAM (hepatic and glial cell adhesion molecule)

Identity

Alias_nameshepatocyte cell adhesion molecule
Alias_symbol (synonym)FLJ25530
hepaCAM
GLIALCAM
Other aliasGlialCAM
HEPN1
MLC2A
MLC2B
HGNC (Hugo) HEPACAM
LocusID (NCBI) 220296
Atlas_Id 45612
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124919250 and ends at 124936412 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HEPACAM   26361
Cards
Entrez_Gene (NCBI)HEPACAM  220296  hepatic and glial cell adhesion molecule
AliasesGlialCAM; HEPN1; MLC2A; MLC2B
GeneCards (Weizmann)HEPACAM
Ensembl hg19 (Hinxton)ENSG00000165478 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165478 [Gene_View]  ENSG00000165478 [Sequence]  chr11:124919250-124936412 [Contig_View]  HEPACAM [Vega]
ICGC DataPortalENSG00000165478
TCGA cBioPortalHEPACAM
AceView (NCBI)HEPACAM
Genatlas (Paris)HEPACAM
WikiGenes220296
SOURCE (Princeton)HEPACAM
Genetics Home Reference (NIH)HEPACAM
Genomic and cartography
GoldenPath hg38 (UCSC)HEPACAM  -     chr11:124919250-124936412 -  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HEPACAM  -     11q24.2   [Description]    (hg19-Feb_2009)
GoldenPathHEPACAM - 11q24.2 [CytoView hg19]  HEPACAM - 11q24.2 [CytoView hg38]
ImmunoBaseENSG00000165478
Mapping of homologs : NCBIHEPACAM [Mapview hg19]  HEPACAM [Mapview hg38]
OMIM604004   611642   613925   613926   
Gene and transcription
Genbank (Entrez)AK098396 AK122595 AL834419 AY047587 BC037810
RefSeq transcript (Entrez)NM_152722
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HEPACAM
Alternative Splicing GalleryENSG00000165478
Gene ExpressionHEPACAM [ NCBI-GEO ]   HEPACAM [ EBI - ARRAY_EXPRESS ]   HEPACAM [ SEEK ]   HEPACAM [ MEM ]
Gene Expression Viewer (FireBrowse)HEPACAM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220296
GTEX Portal (Tissue expression)HEPACAM
Human Protein AtlasENSG00000165478-HEPACAM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14CZ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14CZ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14CZ8
Splice isoforms : SwissVarQ14CZ8
PhosPhoSitePlusQ14CZ8
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)HEPACAM
DMDM Disease mutations220296
Blocks (Seattle)HEPACAM
SuperfamilyQ14CZ8
Human Protein Atlas [tissue]ENSG00000165478-HEPACAM [tissue]
Peptide AtlasQ14CZ8
HPRD08068
IPIIPI00167215   IPI00446859   
Protein Interaction databases
DIP (DOE-UCLA)Q14CZ8
IntAct (EBI)Q14CZ8
FunCoupENSG00000165478
BioGRIDHEPACAM
STRING (EMBL)HEPACAM
ZODIACHEPACAM
Ontologies - Pathways
QuickGOQ14CZ8
Ontology : AmiGOcytoplasm  cell-cell junction  cell cycle arrest  cell adhesion  integral component of membrane  axon  cellular protein localization  regulation of growth  
Ontology : EGO-EBIcytoplasm  cell-cell junction  cell cycle arrest  cell adhesion  integral component of membrane  axon  cellular protein localization  regulation of growth  
NDEx NetworkHEPACAM
Atlas of Cancer Signalling NetworkHEPACAM
Wikipedia pathwaysHEPACAM
Orthology - Evolution
OrthoDB220296
GeneTree (enSembl)ENSG00000165478
Phylogenetic Trees/Animal Genes : TreeFamHEPACAM
HOGENOMQ14CZ8
Homologs : HomoloGeneHEPACAM
Homology/Alignments : Family Browser (UCSC)HEPACAM
Gene fusions - Rearrangements
Fusion : QuiverHEPACAM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHEPACAM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HEPACAM
dbVarHEPACAM
ClinVarHEPACAM
1000_GenomesHEPACAM 
Exome Variant ServerHEPACAM
ExAC (Exome Aggregation Consortium)ENSG00000165478
GNOMAD BrowserENSG00000165478
Varsome BrowserHEPACAM
Genetic variants : HAPMAP220296
Genomic Variants (DGV)HEPACAM [DGVbeta]
DECIPHERHEPACAM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHEPACAM 
Mutations
ICGC Data PortalHEPACAM 
TCGA Data PortalHEPACAM 
Broad Tumor PortalHEPACAM
OASIS PortalHEPACAM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHEPACAM  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHEPACAM
Mutations and Diseases : HGMDHEPACAM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HEPACAM
DgiDB (Drug Gene Interaction Database)HEPACAM
DoCM (Curated mutations)HEPACAM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HEPACAM (select a term)
intoGenHEPACAM
Cancer3DHEPACAM(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604004    611642    613925    613926   
Orphanet18693    3715   
DisGeNETHEPACAM
MedgenHEPACAM
Genetic Testing Registry HEPACAM
NextProtQ14CZ8 [Medical]
TSGene220296
GENETestsHEPACAM
Target ValidationHEPACAM
Huge Navigator HEPACAM [HugePedia]
snp3D : Map Gene to Disease220296
BioCentury BCIQHEPACAM
ClinGenHEPACAM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220296
Chemical/Pharm GKB GenePA162390830
Clinical trialHEPACAM
Miscellaneous
canSAR (ICR)HEPACAM (select the gene name)
HarmonizomeHEPACAM
DataMed IndexHEPACAM
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHEPACAM
EVEXHEPACAM
GoPubMedHEPACAM
iHOPHEPACAM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun May 10 12:17:19 CEST 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.