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HEPACAM2 (HEPACAM family member 2)

Identity

Alias_symbol (synonym)FLJ38683
Other aliasMIKI
HGNC (Hugo) HEPACAM2
LocusID (NCBI) 253012
Atlas_Id 64237
Location 7q21.3  [Link to chromosome band 7q21]
Location_base_pair Starts at 92817899 and ends at 92855832 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDK6 (7q21.2) / HEPACAM2 (7q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HEPACAM2   27364
Cards
Entrez_Gene (NCBI)HEPACAM2  253012  HEPACAM family member 2
AliasesMIKI
GeneCards (Weizmann)HEPACAM2
Ensembl hg19 (Hinxton)ENSG00000188175 [Gene_View]  chr7:92817899-92855832 [Contig_View]  HEPACAM2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188175 [Gene_View]  chr7:92817899-92855832 [Contig_View]  HEPACAM2 [Vega]
ICGC DataPortalENSG00000188175
TCGA cBioPortalHEPACAM2
AceView (NCBI)HEPACAM2
Genatlas (Paris)HEPACAM2
WikiGenes253012
SOURCE (Princeton)HEPACAM2
Genetics Home Reference (NIH)HEPACAM2
Genomic and cartography
GoldenPath hg19 (UCSC)HEPACAM2  -     chr7:92817899-92855832 -  7q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HEPACAM2  -     7q21.3   [Description]    (hg38-Dec_2013)
EnsemblHEPACAM2 - 7q21.3 [CytoView hg19]  HEPACAM2 - 7q21.3 [CytoView hg38]
Mapping of homologs : NCBIHEPACAM2 [Mapview hg19]  HEPACAM2 [Mapview hg38]
OMIM614133   
Gene and transcription
Genbank (Entrez)AK096002 AK298361 AY358345 BC046365 BC136300
RefSeq transcript (Entrez)NM_001039372 NM_001288804 NM_001288810 NM_198151
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)HEPACAM2
Cluster EST : UnigeneHs.443169 [ NCBI ]
CGAP (NCI)Hs.443169
Alternative Splicing GalleryENSG00000188175
Gene ExpressionHEPACAM2 [ NCBI-GEO ]   HEPACAM2 [ EBI - ARRAY_EXPRESS ]   HEPACAM2 [ SEEK ]   HEPACAM2 [ MEM ]
Gene Expression Viewer (FireBrowse)HEPACAM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253012
GTEX Portal (Tissue expression)HEPACAM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MVW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MVW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MVW5
Splice isoforms : SwissVarA8MVW5
PhosPhoSitePlusA8MVW5
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)I-set (PF07679)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07679    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)HEPACAM2
DMDM Disease mutations253012
Blocks (Seattle)HEPACAM2
SuperfamilyA8MVW5
Human Protein AtlasENSG00000188175
Peptide AtlasA8MVW5
HPRD14138
IPIIPI00719310   IPI00377047   IPI00910224   IPI00927539   
Protein Interaction databases
DIP (DOE-UCLA)A8MVW5
IntAct (EBI)A8MVW5
FunCoupENSG00000188175
BioGRIDHEPACAM2
STRING (EMBL)HEPACAM2
ZODIACHEPACAM2
Ontologies - Pathways
QuickGOA8MVW5
Ontology : AmiGOGolgi membrane  protein binding  Golgi apparatus  centrosome  spindle  mitotic nuclear division  integral component of membrane  midbody  centrosome organization  cell division  
Ontology : EGO-EBIGolgi membrane  protein binding  Golgi apparatus  centrosome  spindle  mitotic nuclear division  integral component of membrane  midbody  centrosome organization  cell division  
NDEx NetworkHEPACAM2
Atlas of Cancer Signalling NetworkHEPACAM2
Wikipedia pathwaysHEPACAM2
Orthology - Evolution
OrthoDB253012
GeneTree (enSembl)ENSG00000188175
Phylogenetic Trees/Animal Genes : TreeFamHEPACAM2
HOVERGENA8MVW5
HOGENOMA8MVW5
Homologs : HomoloGeneHEPACAM2
Homology/Alignments : Family Browser (UCSC)HEPACAM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHEPACAM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HEPACAM2
dbVarHEPACAM2
ClinVarHEPACAM2
1000_GenomesHEPACAM2 
Exome Variant ServerHEPACAM2
ExAC (Exome Aggregation Consortium)HEPACAM2 (select the gene name)
Genetic variants : HAPMAP253012
Genomic Variants (DGV)HEPACAM2 [DGVbeta]
DECIPHER (Syndromes)7:92817899-92855832  ENSG00000188175
CONAN: Copy Number AnalysisHEPACAM2 
Mutations
ICGC Data PortalHEPACAM2 
TCGA Data PortalHEPACAM2 
Broad Tumor PortalHEPACAM2
OASIS PortalHEPACAM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHEPACAM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHEPACAM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HEPACAM2
DgiDB (Drug Gene Interaction Database)HEPACAM2
DoCM (Curated mutations)HEPACAM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HEPACAM2 (select a term)
intoGenHEPACAM2
Cancer3DHEPACAM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614133   
Orphanet
MedgenHEPACAM2
Genetic Testing Registry HEPACAM2
NextProtA8MVW5 [Medical]
TSGene253012
GENETestsHEPACAM2
Huge Navigator HEPACAM2 [HugePedia]
snp3D : Map Gene to Disease253012
BioCentury BCIQHEPACAM2
ClinGenHEPACAM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253012
Chemical/Pharm GKB GenePA162390849
Clinical trialHEPACAM2
Miscellaneous
canSAR (ICR)HEPACAM2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHEPACAM2
EVEXHEPACAM2
GoPubMedHEPACAM2
iHOPHEPACAM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:37 CET 2017

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