Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HEPN1 (hepatocellular carcinoma, down-regulated 1)

Identity

Alias_namesHEPACAM opposite strand 1
Other alias-
HGNC (Hugo) HEPN1
LocusID (NCBI) 641654
Atlas_Id 43088
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124919250 and ends at 124920677 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HEPN1   34400
Cards
Entrez_Gene (NCBI)HEPN1  641654  hepatocellular carcinoma, down-regulated 1
Aliases
GeneCards (Weizmann)HEPN1
Ensembl hg19 (Hinxton)ENSG00000221932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221932 [Gene_View]  chr11:124919250-124920677 [Contig_View]  HEPN1 [Vega]
ICGC DataPortalENSG00000221932
TCGA cBioPortalHEPN1
AceView (NCBI)HEPN1
Genatlas (Paris)HEPN1
WikiGenes641654
SOURCE (Princeton)HEPN1
Genetics Home Reference (NIH)HEPN1
Genomic and cartography
GoldenPath hg38 (UCSC)HEPN1  -     chr11:124919250-124920677 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HEPN1  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblHEPN1 - 11q24.2 [CytoView hg19]  HEPN1 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIHEPN1 [Mapview hg19]  HEPN1 [Mapview hg38]
OMIM611641   
Gene and transcription
Genbank (Entrez)AY275431 BC148521 BC156583
RefSeq transcript (Entrez)NM_001037558
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HEPN1
Cluster EST : UnigeneHs.159863 [ NCBI ]
CGAP (NCI)Hs.159863
Alternative Splicing GalleryENSG00000221932
Gene ExpressionHEPN1 [ NCBI-GEO ]   HEPN1 [ EBI - ARRAY_EXPRESS ]   HEPN1 [ SEEK ]   HEPN1 [ MEM ]
Gene Expression Viewer (FireBrowse)HEPN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)641654
GTEX Portal (Tissue expression)HEPN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6WQI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6WQI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6WQI6
Splice isoforms : SwissVarQ6WQI6
PhosPhoSitePlusQ6WQI6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HEPN1
DMDM Disease mutations641654
Blocks (Seattle)HEPN1
SuperfamilyQ6WQI6
Human Protein AtlasENSG00000221932
Peptide AtlasQ6WQI6
IPIIPI00449996   
Protein Interaction databases
DIP (DOE-UCLA)Q6WQI6
IntAct (EBI)Q6WQI6
FunCoupENSG00000221932
BioGRIDHEPN1
STRING (EMBL)HEPN1
ZODIACHEPN1
Ontologies - Pathways
QuickGOQ6WQI6
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkHEPN1
Atlas of Cancer Signalling NetworkHEPN1
Wikipedia pathwaysHEPN1
Orthology - Evolution
OrthoDB641654
GeneTree (enSembl)ENSG00000221932
Phylogenetic Trees/Animal Genes : TreeFamHEPN1
HOVERGENQ6WQI6
HOGENOMQ6WQI6
Homologs : HomoloGeneHEPN1
Homology/Alignments : Family Browser (UCSC)HEPN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHEPN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HEPN1
dbVarHEPN1
ClinVarHEPN1
1000_GenomesHEPN1 
Exome Variant ServerHEPN1
ExAC (Exome Aggregation Consortium)HEPN1 (select the gene name)
Genetic variants : HAPMAP641654
Genomic Variants (DGV)HEPN1 [DGVbeta]
DECIPHERHEPN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHEPN1 
Mutations
ICGC Data PortalHEPN1 
TCGA Data PortalHEPN1 
Broad Tumor PortalHEPN1
OASIS PortalHEPN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHEPN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHEPN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HEPN1
DgiDB (Drug Gene Interaction Database)HEPN1
DoCM (Curated mutations)HEPN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HEPN1 (select a term)
intoGenHEPN1
Cancer3DHEPN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611641   
Orphanet
MedgenHEPN1
Genetic Testing Registry HEPN1
NextProtQ6WQI6 [Medical]
TSGene641654
GENETestsHEPN1
Target ValidationHEPN1
Huge Navigator HEPN1 [HugePedia]
snp3D : Map Gene to Disease641654
BioCentury BCIQHEPN1
ClinGenHEPN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD641654
Chemical/Pharm GKB GenePA162390850
Clinical trialHEPN1
Miscellaneous
canSAR (ICR)HEPN1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHEPN1
EVEXHEPN1
GoPubMedHEPN1
iHOPHEPN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:11:19 CEST 2017

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