Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HEPN1 (hepatocellular carcinoma, down-regulated 1)

Identity

Other names-
HGNC (Hugo) HEPN1
LocusID (NCBI) 641654
Location 11q24.2
Location_base_pair Starts at 124789146 and ends at 124790573 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HEPN1   34400
Entrez_Gene (NCBI)HEPN1  641654  hepatocellular carcinoma, down-regulated 1
Cards
GeneCards (Weizmann)HEPN1
Ensembl (Hinxton)ENSG00000221932 [Gene_View]  chr11:124789146-124790573 [Contig_View]  HEPN1 [Vega]
AceView (NCBI)HEPN1
Genatlas (Paris)HEPN1
SOURCE (Stanford)NM_001037558
Genomic and cartography
GoldenPath (UCSC)HEPN1  -  11q24.2   chr11:124789146-124790573 +  11q24.2   [Description]    (hg19-Feb_2009)
EnsemblHEPN1 - 11q24.2 [CytoView]
Mapping of homologs : NCBIHEPN1 [Mapview]
OMIM611641   
Gene and transcription
Genbank (Entrez)AY275431 BC148521 BC156583
RefSeq transcript (SRS)NM_001037558
RefSeq transcript (Entrez)NM_001037558
RefSeq genomic (SRS)AC_000143 NC_000011 NC_018922 NG_029603 NT_033899 NW_001838043 NW_004078073
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_029603 NT_033899 NW_001838043 NW_004078073
Consensus coding sequences : CCDS (NCBI)HEPN1
Cluster EST : UnigeneHs.159863 [ SRS ] Hs.159863 [ NCBI ]
CGAP (NCI)Hs.159863
Alternative Splicing : Fast-db (Paris)GSHG0005364
Alternative Splicing GalleryENSG00000221932
Gene ExpressionHEPN1 [ NCBI-GEO ]   HEPN1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6WQI6 (SRS) Q6WQI6 (Uniprot)
NextProtQ6WQI6
With graphics : InterProQ6WQI6
Splice isoforms : SwissVarQ6WQI6(Swissvar)
Related proteins : CluSTrQ6WQI6
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM641654
Blocks (Seattle)Q6WQI6
Human Protein AtlasENSG00000221932
IPIIPI00449996   
Protein Interaction databases
DIP (DOE-UCLA)Q6WQI6
IntAct (EBI)Q6WQI6
FunCoupENSG00000221932
REACTOMEHEPN1
Protein Interaction Database641654
BioGRIDHEPN1
InParanoidQ6WQI6
Interologous Interaction database Q6WQI6
IntegromeDBHEPN1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HEPN1
SNP (GeneSNP Utah)HEPN1
SNP : HGBaseHEPN1
Genetic variants : HAPMAPHEPN1
Somatic Mutations in Cancer : COSMICHEPN1 
CONAN: Copy Number AnalysisHEPN1 
Mutations and Diseases : HGMDHEPN1
OMIM611641   
GENETests611641   
Disease Genetic AssociationHEPN1
Huge Navigator HEPN1 [HugePedia]  HEPN1 [HugeCancerGEM]
Genomic VariantsHEPN1  HEPN1 [DGVbeta]
snp3D : Map Gene to Disease641654
General knowledge
Homologs : HomoloGeneHEPN1
Homology/Alignments : Family Browser (UCSC)HEPN1
Phylogenetic Trees/Animal Genes : TreeFamHEPN1
Chemical/Protein Interactions : CTD641654
Chemical/Pharm GKB GenePA162390850
Clinical trialHEPN1
Cancer Resource (Charite)ENSG00000221932
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
Other databases
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
PubGeneHEPN1
iHOPHEPN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:31:26 CEST 2013
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