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HERC2P3 (hect domain and RLD 2 pseudogene 3)

Identity

Alias_symbol (synonym)D15F37S4
LOC283755
Other alias
HGNC (Hugo) HERC2P3
LocusID (NCBI) 283755
Atlas_Id 64242
Location 15_KI270905v1_alt  [Link to chromosome band 15]
Location_base_pair Starts at 908890 and ends at 918184 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HERC2 (15q13.1) / HERC2P3 (15q11.1)HERC2P3 (15q11.1) / AK300387 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HERC2P3   4871
Cards
Entrez_Gene (NCBI)HERC2P3  283755  hect domain and RLD 2 pseudogene 3
AliasesD15F37S4
GeneCards (Weizmann)HERC2P3
Ensembl hg19 (Hinxton)ENSG00000180229 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180229 [Gene_View]  chr15_KI270905v1_alt:908890-918184 [Contig_View]  HERC2P3 [Vega]
ICGC DataPortalENSG00000180229
TCGA cBioPortalHERC2P3
AceView (NCBI)HERC2P3
Genatlas (Paris)HERC2P3
WikiGenes283755
SOURCE (Princeton)HERC2P3
Genetics Home Reference (NIH)HERC2P3
Genomic and cartography
GoldenPath hg38 (UCSC)HERC2P3  -     chr15_KI270905v1_alt:908890-918184 +  15_KI270905v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HERC2P3  -     15_KI270905v1_alt   [Description]    (hg19-Feb_2009)
EnsemblHERC2P3 - 15_KI270905v1_alt [CytoView hg19]  HERC2P3 - 15_KI270905v1_alt [CytoView hg38]
Mapping of homologs : NCBIHERC2P3 [Mapview hg19]  HERC2P3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK294470 AK294795 BC000975 BC033888 BC094757
RefSeq transcript (Entrez)NM_001024682
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HERC2P3
Cluster EST : UnigeneHs.608918 [ NCBI ]
CGAP (NCI)Hs.608918
Alternative Splicing GalleryENSG00000180229
Gene ExpressionHERC2P3 [ NCBI-GEO ]   HERC2P3 [ EBI - ARRAY_EXPRESS ]   HERC2P3 [ SEEK ]   HERC2P3 [ MEM ]
Gene Expression Viewer (FireBrowse)HERC2P3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283755
GTEX Portal (Tissue expression)HERC2P3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVR0
Splice isoforms : SwissVarQ9BVR0
PhosPhoSitePlusQ9BVR0
Domaine pattern : Prosite (Expaxy)MIB_HERC2 (PS51416)   
Domains : Interpro (EBI)Mib_Herc2   
Domain families : Pfam (Sanger)MIB_HERC2 (PF06701)   
Domain families : Pfam (NCBI)pfam06701   
Conserved Domain (NCBI)HERC2P3
DMDM Disease mutations283755
Blocks (Seattle)HERC2P3
SuperfamilyQ9BVR0
Human Protein AtlasENSG00000180229
Peptide AtlasQ9BVR0
HPRD18766
IPIIPI00398607   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVR0
IntAct (EBI)Q9BVR0
FunCoupENSG00000180229
BioGRIDHERC2P3
STRING (EMBL)HERC2P3
ZODIACHERC2P3
Ontologies - Pathways
QuickGOQ9BVR0
Ontology : AmiGOubiquitin-protein transferase activity  protein ubiquitination  metal ion binding  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein ubiquitination  metal ion binding  
NDEx NetworkHERC2P3
Atlas of Cancer Signalling NetworkHERC2P3
Wikipedia pathwaysHERC2P3
Orthology - Evolution
OrthoDB283755
GeneTree (enSembl)ENSG00000180229
Phylogenetic Trees/Animal Genes : TreeFamHERC2P3
HOVERGENQ9BVR0
HOGENOMQ9BVR0
Homologs : HomoloGeneHERC2P3
Homology/Alignments : Family Browser (UCSC)HERC2P3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHERC2P3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HERC2P3
dbVarHERC2P3
ClinVarHERC2P3
1000_GenomesHERC2P3 
Exome Variant ServerHERC2P3
ExAC (Exome Aggregation Consortium)HERC2P3 (select the gene name)
Genetic variants : HAPMAP283755
Genomic Variants (DGV)HERC2P3 [DGVbeta]
DECIPHERHERC2P3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHERC2P3 
Mutations
ICGC Data PortalHERC2P3 
TCGA Data PortalHERC2P3 
Broad Tumor PortalHERC2P3
OASIS PortalHERC2P3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHERC2P3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHERC2P3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HERC2P3
DgiDB (Drug Gene Interaction Database)HERC2P3
DoCM (Curated mutations)HERC2P3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HERC2P3 (select a term)
intoGenHERC2P3
Cancer3DHERC2P3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHERC2P3
Genetic Testing Registry HERC2P3
NextProtQ9BVR0 [Medical]
TSGene283755
GENETestsHERC2P3
Target ValidationHERC2P3
Huge Navigator HERC2P3 [HugePedia]
snp3D : Map Gene to Disease283755
BioCentury BCIQHERC2P3
ClinGenHERC2P3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283755
Chemical/Pharm GKB GenePA29246
Clinical trialHERC2P3
Miscellaneous
canSAR (ICR)HERC2P3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHERC2P3
EVEXHERC2P3
GoPubMedHERC2P3
iHOPHERC2P3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:24 CEST 2017

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