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HERPUD2 (HERPUD family member 2)

Identity

Alias_symbol (synonym)FLJ22313
Other alias-
HGNC (Hugo) HERPUD2
LocusID (NCBI) 64224
Atlas_Id 64246
Location 7p14.2  [Link to chromosome band 7p14]
Location_base_pair Starts at 35632660 and ends at 35695162 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACTB (7p22.1) / HERPUD2 (7p14.2)HERPUD2 (7p14.2) / RASA4 (7q22.1)HERPUD2 (7p14.2) / SEPT7 (7p14.2)
LOC100507412 (-) / HERPUD2 (7p14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HERPUD2   21915
Cards
Entrez_Gene (NCBI)HERPUD2  64224  HERPUD family member 2
Aliases
GeneCards (Weizmann)HERPUD2
Ensembl hg19 (Hinxton)ENSG00000122557 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122557 [Gene_View]  chr7:35632660-35695162 [Contig_View]  HERPUD2 [Vega]
ICGC DataPortalENSG00000122557
TCGA cBioPortalHERPUD2
AceView (NCBI)HERPUD2
Genatlas (Paris)HERPUD2
WikiGenes64224
SOURCE (Princeton)HERPUD2
Genetics Home Reference (NIH)HERPUD2
Genomic and cartography
GoldenPath hg38 (UCSC)HERPUD2  -     chr7:35632660-35695162 -  7p14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HERPUD2  -     7p14.2   [Description]    (hg19-Feb_2009)
EnsemblHERPUD2 - 7p14.2 [CytoView hg19]  HERPUD2 - 7p14.2 [CytoView hg38]
Mapping of homologs : NCBIHERPUD2 [Mapview hg19]  HERPUD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025966 AK055708 AK315685 BC005091 BC020264
RefSeq transcript (Entrez)NM_022373
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HERPUD2
Cluster EST : UnigeneHs.643051 [ NCBI ]
CGAP (NCI)Hs.643051
Alternative Splicing GalleryENSG00000122557
Gene ExpressionHERPUD2 [ NCBI-GEO ]   HERPUD2 [ EBI - ARRAY_EXPRESS ]   HERPUD2 [ SEEK ]   HERPUD2 [ MEM ]
Gene Expression Viewer (FireBrowse)HERPUD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64224
GTEX Portal (Tissue expression)HERPUD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSE4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSE4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSE4
Splice isoforms : SwissVarQ9BSE4
PhosPhoSitePlusQ9BSE4
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Ubiquitin-rel_dom    Ubiquitin_dom   
Domain families : Pfam (Sanger)ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00240   
Domain families : Smart (EMBL)UBQ (SM00213)  
Conserved Domain (NCBI)HERPUD2
DMDM Disease mutations64224
Blocks (Seattle)HERPUD2
PDB (SRS)2KDB   
PDB (PDBSum)2KDB   
PDB (IMB)2KDB   
PDB (RSDB)2KDB   
Structural Biology KnowledgeBase2KDB   
SCOP (Structural Classification of Proteins)2KDB   
CATH (Classification of proteins structures)2KDB   
SuperfamilyQ9BSE4
Human Protein AtlasENSG00000122557
Peptide AtlasQ9BSE4
HPRD07984
IPIIPI00106762   IPI00924572   IPI00927777   IPI00926388   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSE4
IntAct (EBI)Q9BSE4
FunCoupENSG00000122557
BioGRIDHERPUD2
STRING (EMBL)HERPUD2
ZODIACHERPUD2
Ontologies - Pathways
QuickGOQ9BSE4
Ontology : AmiGOresponse to unfolded protein  spermatogenesis  integral component of membrane  
Ontology : EGO-EBIresponse to unfolded protein  spermatogenesis  integral component of membrane  
NDEx NetworkHERPUD2
Atlas of Cancer Signalling NetworkHERPUD2
Wikipedia pathwaysHERPUD2
Orthology - Evolution
OrthoDB64224
GeneTree (enSembl)ENSG00000122557
Phylogenetic Trees/Animal Genes : TreeFamHERPUD2
HOVERGENQ9BSE4
HOGENOMQ9BSE4
Homologs : HomoloGeneHERPUD2
Homology/Alignments : Family Browser (UCSC)HERPUD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHERPUD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HERPUD2
dbVarHERPUD2
ClinVarHERPUD2
1000_GenomesHERPUD2 
Exome Variant ServerHERPUD2
ExAC (Exome Aggregation Consortium)HERPUD2 (select the gene name)
Genetic variants : HAPMAP64224
Genomic Variants (DGV)HERPUD2 [DGVbeta]
DECIPHERHERPUD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHERPUD2 
Mutations
ICGC Data PortalHERPUD2 
TCGA Data PortalHERPUD2 
Broad Tumor PortalHERPUD2
OASIS PortalHERPUD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHERPUD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHERPUD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HERPUD2
DgiDB (Drug Gene Interaction Database)HERPUD2
DoCM (Curated mutations)HERPUD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HERPUD2 (select a term)
intoGenHERPUD2
Cancer3DHERPUD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHERPUD2
Genetic Testing Registry HERPUD2
NextProtQ9BSE4 [Medical]
TSGene64224
GENETestsHERPUD2
Target ValidationHERPUD2
Huge Navigator HERPUD2 [HugePedia]
snp3D : Map Gene to Disease64224
BioCentury BCIQHERPUD2
ClinGenHERPUD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64224
Chemical/Pharm GKB GenePA144596425
Clinical trialHERPUD2
Miscellaneous
canSAR (ICR)HERPUD2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHERPUD2
EVEXHERPUD2
GoPubMedHERPUD2
iHOPHERPUD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:24 CEST 2017

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