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HES7 (hes family bHLH transcription factor 7)

Identity

Other namesSCDO4
bHLHb37
HGNC (Hugo) HES7
LocusID (NCBI) 84667
Location 17p13.1
Location_base_pair Starts at 8023908 and ends at 8027410 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HES7   15977
Cards
Entrez_Gene (NCBI)HES7  84667  hes family bHLH transcription factor 7
GeneCards (Weizmann)HES7
Ensembl (Hinxton)ENSG00000179111 [Gene_View]  chr17:8023908-8027410 [Contig_View]  HES7 [Vega]
ICGC DataPortalENSG00000179111
AceView (NCBI)HES7
Genatlas (Paris)HES7
WikiGenes84667
SOURCE (Princeton)NM_001165967 NM_032580
Genomic and cartography
GoldenPath (UCSC)HES7  -  17p13.1   chr17:8023908-8027410 -  17p13.1   [Description]    (hg19-Feb_2009)
EnsemblHES7 - 17p13.1 [CytoView]
Mapping of homologs : NCBIHES7 [Mapview]
OMIM608059   613686   
Gene and transcription
Genbank (Entrez)AB049064 BC039887 BC156907 BI259590 BU620502
RefSeq transcript (Entrez)NM_001165967 NM_032580
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_015816 NT_010718 NW_001838403 NW_004929405
Consensus coding sequences : CCDS (NCBI)HES7
Cluster EST : UnigeneHs.434828 [ NCBI ]
CGAP (NCI)Hs.434828
Alternative Splicing : Fast-db (Paris)GSHG0013068
Alternative Splicing GalleryENSG00000179111
Gene ExpressionHES7 [ NCBI-GEO ]     HES7 [ SEEK ]   HES7 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYE0 (Uniprot)
NextProtQ9BYE0  [Medical]
With graphics : InterProQ9BYE0
Splice isoforms : SwissVarQ9BYE0 (Swissvar)
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)    ORANGE (PS51054)   
Domains : Interpro (EBI)bHLH_dom    Orange   
Related proteins : CluSTrQ9BYE0
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
DMDM Disease mutations84667
Blocks (Seattle)Q9BYE0
Human Protein AtlasENSG00000179111
Peptide AtlasQ9BYE0
HPRD09729
IPIIPI00000284   IPI00790026   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYE0
IntAct (EBI)Q9BYE0
FunCoupENSG00000179111
BioGRIDHES7
InParanoidQ9BYE0
Interologous Interaction database Q9BYE0
IntegromeDBHES7
STRING (EMBL)HES7
Ontologies - Pathways
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  skeletal system development  somitogenesis  DNA binding  nucleus  transcription, DNA-templated  Notch signaling pathway  mesoderm development  transcription factor binding  regulation of somitogenesis  post-anal tail morphogenesis  protein dimerization activity  rhythmic process  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  skeletal system development  somitogenesis  DNA binding  nucleus  transcription, DNA-templated  Notch signaling pathway  mesoderm development  transcription factor binding  regulation of somitogenesis  post-anal tail morphogenesis  protein dimerization activity  rhythmic process  
Pathways : BIOCARTASegmentation Clock [Genes]   
Protein Interaction DatabaseHES7
Wikipedia pathwaysHES7
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HES7
SNP (GeneSNP Utah)HES7
SNP : HGBaseHES7
Genetic variants : HAPMAPHES7
1000_GenomesHES7 
ICGC programENSG00000179111 
CONAN: Copy Number AnalysisHES7 
Somatic Mutations in Cancer : COSMICHES7 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDHES7
OMIM608059    613686   
MedgenHES7
GENETestsHES7
Disease Genetic AssociationHES7
Huge Navigator HES7 [HugePedia]  HES7 [HugeCancerGEM]
Genomic VariantsHES7  HES7 [DGVbeta]
Exome VariantHES7
dbVarHES7
ClinVarHES7
snp3D : Map Gene to Disease84667
General knowledge
Homologs : HomoloGeneHES7
Homology/Alignments : Family Browser (UCSC)HES7
Phylogenetic Trees/Animal Genes : TreeFamHES7
Chemical/Protein Interactions : CTD84667
Chemical/Pharm GKB GenePA29254
Clinical trialHES7
Cancer Resource (Charite)ENSG00000179111
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
CoreMineHES7
iHOPHES7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:50:25 CEST 2014

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