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HES7 (hes family bHLH transcription factor 7)

Identity

Other namesSCDO4
bHLHb37
HGNC (Hugo) HES7
LocusID (NCBI) 84667
Atlas_Id 47219
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 8023908 and ends at 8027410 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HES7   15977
Cards
Entrez_Gene (NCBI)HES7  84667  hes family bHLH transcription factor 7
AliasesSCDO4; bHLHb37
GeneCards (Weizmann)HES7
Ensembl hg19 (Hinxton)ENSG00000179111 [Gene_View]  chr17:8023908-8027410 [Contig_View]  HES7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000179111 [Gene_View]  chr17:8023908-8027410 [Contig_View]  HES7 [Vega]
ICGC DataPortalENSG00000179111
TCGA cBioPortalHES7
AceView (NCBI)HES7
Genatlas (Paris)HES7
WikiGenes84667
SOURCE (Princeton)HES7
Genomic and cartography
GoldenPath hg19 (UCSC)HES7  -     chr17:8023908-8027410 -  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HES7  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblHES7 - 17p13.1 [CytoView hg19]  HES7 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIHES7 [Mapview hg19]  HES7 [Mapview hg38]
OMIM608059   613686   
Gene and transcription
Genbank (Entrez)AB049064 BC039887 BC156907 BI259590 BU620502
RefSeq transcript (Entrez)NM_001165967 NM_032580
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_015816 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)HES7
Cluster EST : UnigeneHs.434828 [ NCBI ]
CGAP (NCI)Hs.434828
Alternative Splicing GalleryENSG00000179111
Gene ExpressionHES7 [ NCBI-GEO ]   HES7 [ EBI - ARRAY_EXPRESS ]   HES7 [ SEEK ]   HES7 [ MEM ]
Gene Expression Viewer (FireBrowse)HES7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84667
GTEX Portal (Tissue expression)HES7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYE0 (Uniprot)
NextProtQ9BYE0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYE0
Splice isoforms : SwissVarQ9BYE0 (Swissvar)
PhosPhoSitePlusQ9BYE0
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)    ORANGE (PS51054)   
Domains : Interpro (EBI)bHLH_dom    HES-7    Orange_dom   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
DMDM Disease mutations84667
Blocks (Seattle)HES7
SuperfamilyQ9BYE0
Human Protein AtlasENSG00000179111
Peptide AtlasQ9BYE0
HPRD09729
IPIIPI00000284   IPI00790026   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYE0
IntAct (EBI)Q9BYE0
FunCoupENSG00000179111
BioGRIDHES7
STRING (EMBL)HES7
ZODIACHES7
Ontologies - Pathways
QuickGOQ9BYE0
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  skeletal system development  somitogenesis  DNA binding  nucleus  transcription, DNA-templated  Notch signaling pathway  mesoderm development  transcription factor binding  regulation of somitogenesis  post-anal tail morphogenesis  protein dimerization activity  rhythmic process  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  skeletal system development  somitogenesis  DNA binding  nucleus  transcription, DNA-templated  Notch signaling pathway  mesoderm development  transcription factor binding  regulation of somitogenesis  post-anal tail morphogenesis  protein dimerization activity  rhythmic process  
Pathways : BIOCARTASegmentation Clock [Genes]   
NDEx NetworkHES7
Atlas of Cancer Signalling NetworkHES7
Wikipedia pathwaysHES7
Orthology - Evolution
OrthoDB84667
GeneTree (enSembl)ENSG00000179111
Phylogenetic Trees/Animal Genes : TreeFamHES7
Homologs : HomoloGeneHES7
Homology/Alignments : Family Browser (UCSC)HES7
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerHES7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HES7
dbVarHES7
ClinVarHES7
1000_GenomesHES7 
Exome Variant ServerHES7
ExAC (Exome Aggregation Consortium)HES7 (select the gene name)
Genetic variants : HAPMAP84667
Genomic Variants (DGV)HES7 [DGVbeta]
Mutations
ICGC Data PortalHES7 
TCGA Data PortalHES7 
Broad Tumor PortalHES7
OASIS PortalHES7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHES7 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HES7
DgiDB (Drug Gene Interaction Database)HES7
DoCM (Curated mutations)HES7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HES7 (select a term)
intoGenHES7
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:8023908-8027410  ENSG00000179111
CONAN: Copy Number AnalysisHES7 
Mutations and Diseases : HGMDHES7
OMIM608059    613686   
MedgenHES7
Genetic Testing Registry HES7
NextProtQ9BYE0 [Medical]
TSGene84667
GENETestsHES7
Huge Navigator HES7 [HugePedia]
snp3D : Map Gene to Disease84667
BioCentury BCIQHES7
ClinGenHES7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84667
Chemical/Pharm GKB GenePA29254
Clinical trialHES7
Miscellaneous
canSAR (ICR)HES7 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHES7
EVEXHES7
GoPubMedHES7
iHOPHES7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:52:39 CEST 2016

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