Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HESX1 (HESX homeobox 1)

Identity

Other namesANF
CPHD5
RPX
HGNC (Hugo) HESX1
LocusID (NCBI) 8820
Location 3p14.3
Location_base_pair Starts at 57231944 and ends at 57234280 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HESX1   4877
Cards
Entrez_Gene (NCBI)HESX1  8820  HESX homeobox 1
GeneCards (Weizmann)HESX1
Ensembl (Hinxton) [Gene_View]  chr3:57231944-57234280 [Contig_View]  HESX1 [Vega]
cBioPortalHESX1
AceView (NCBI)HESX1
Genatlas (Paris)HESX1
WikiGenes8820
SOURCE (Princeton)NM_003865
Genomic and cartography
GoldenPath (UCSC)HESX1  -  3p14.3   chr3:57231944-57234280 -  3p14.3   [Description]    (hg19-Feb_2009)
EnsemblHESX1 - 3p14.3 [CytoView]
Mapping of homologs : NCBIHESX1 [Mapview]
OMIM182230   601802   
Gene and transcription
Genbank (Entrez)AI652412 BC069515 BC093979 BC112089 EU446670
RefSeq transcript (Entrez)NM_003865
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NG_008242 NT_022517 NW_001838877 NW_004929309
Consensus coding sequences : CCDS (NCBI)HESX1
Cluster EST : UnigeneHs.171980 [ NCBI ]
CGAP (NCI)Hs.171980
Alternative Splicing : Fast-db (Paris)GSHG0021796
Gene ExpressionHESX1 [ NCBI-GEO ]     HESX1 [ SEEK ]   HESX1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBX0 (Uniprot)
NextProtQ9UBX0  [Medical]
With graphics : InterProQ9UBX0
Splice isoforms : SwissVarQ9UBX0 (Swissvar)
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_CS [organisation]   Homeobox_dom [organisation]   Homeodomain-like [organisation]  
Related proteins : CluSTrQ9UBX0
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
DMDM Disease mutations8820
Blocks (Seattle)Q9UBX0
PDB (SRS)2K40   
PDB (PDBSum)2K40   
PDB (IMB)2K40   
PDB (RSDB)2K40   
Peptide AtlasQ9UBX0
HPRD03482
IPIIPI00002815   IPI00796112   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBX0
IntAct (EBI)Q9UBX0
BioGRIDHESX1
InParanoidQ9UBX0
Interologous Interaction database Q9UBX0
IntegromeDBHESX1
STRING (EMBL)HESX1
Ontologies - Pathways
Ontology : AmiGODNA binding  chromatin binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  brain development  protein C-terminus binding  otic vesicle formation  sequence-specific DNA binding  nose development  negative regulation of transcription, DNA-templated  protein N-terminus binding  forebrain morphogenesis  
Ontology : EGO-EBIDNA binding  chromatin binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  brain development  protein C-terminus binding  otic vesicle formation  sequence-specific DNA binding  nose development  negative regulation of transcription, DNA-templated  protein N-terminus binding  forebrain morphogenesis  
Protein Interaction DatabaseHESX1
Wikipedia pathwaysHESX1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HESX1
snp3D : Map Gene to Disease8820
SNP (GeneSNP Utah)HESX1
SNP : HGBaseHESX1
Genetic variants : HAPMAPHESX1
Exome VariantHESX1
1000_GenomesHESX1 
Somatic Mutations in Cancer : COSMICHESX1 
CONAN: Copy Number AnalysisHESX1 
Mutations and Diseases : HGMDHESX1
Mutations and Diseases : intOGenHESX1
Genomic VariantsHESX1  HESX1 [DGVbeta]
dbVarHESX1
ClinVarHESX1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM182230    601802   
MedgenHESX1
GENETestsHESX1
Disease Genetic AssociationHESX1
Huge Navigator HESX1 [HugePedia]  HESX1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneHESX1
Homology/Alignments : Family Browser (UCSC)HESX1
Phylogenetic Trees/Animal Genes : TreeFamHESX1
Chemical/Protein Interactions : CTD8820
Chemical/Pharm GKB GenePA29255
Clinical trialHESX1
Other databases
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
CoreMineHESX1
iHOPHESX1
OncoSearchHESX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:49:20 CEST 2014

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