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HEXA-AS1 (HEXA antisense RNA 1)

Identity

Alias_namesC15orf34
chromosome 15 open reading frame 34
HEXA antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)FLJ13315
Other alias
HGNC (Hugo) HEXA-AS1
LocusID (NCBI) 80072
Atlas_Id 64248
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 72376366 and ends at 72377927 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HEXA-AS1   25810
Cards
Entrez_Gene (NCBI)HEXA-AS1  80072  HEXA antisense RNA 1
AliasesC15orf34
GeneCards (Weizmann)HEXA-AS1
Ensembl hg19 (Hinxton)ENSG00000260339 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260339 [Gene_View]  chr15:72376366-72377927 [Contig_View]  HEXA-AS1 [Vega]
ICGC DataPortalENSG00000260339
TCGA cBioPortalHEXA-AS1
AceView (NCBI)HEXA-AS1
Genatlas (Paris)HEXA-AS1
WikiGenes80072
SOURCE (Princeton)HEXA-AS1
Genetics Home Reference (NIH)HEXA-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)HEXA-AS1  -     chr15:72376366-72377927 +  15q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HEXA-AS1  -     15q23   [Description]    (hg19-Feb_2009)
EnsemblHEXA-AS1 - 15q23 [CytoView hg19]  HEXA-AS1 - 15q23 [CytoView hg38]
Mapping of homologs : NCBIHEXA-AS1 [Mapview hg19]  HEXA-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023377 BC068211
RefSeq transcript (Entrez)NM_001037223 NM_025005
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HEXA-AS1
Cluster EST : UnigeneHs.591113 [ NCBI ]
CGAP (NCI)Hs.591113
Alternative Splicing GalleryENSG00000260339
Gene ExpressionHEXA-AS1 [ NCBI-GEO ]   HEXA-AS1 [ EBI - ARRAY_EXPRESS ]   HEXA-AS1 [ SEEK ]   HEXA-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)HEXA-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80072
GTEX Portal (Tissue expression)HEXA-AS1
Human Protein AtlasENSG00000260339-HEXA-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8Q6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8Q6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8Q6
Splice isoforms : SwissVarQ9H8Q6
PhosPhoSitePlusQ9H8Q6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HEXA-AS1
DMDM Disease mutations80072
Blocks (Seattle)HEXA-AS1
SuperfamilyQ9H8Q6
Human Protein Atlas [tissue]ENSG00000260339-HEXA-AS1 [tissue]
Peptide AtlasQ9H8Q6
IPIIPI00017419   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8Q6
IntAct (EBI)Q9H8Q6
FunCoupENSG00000260339
BioGRIDHEXA-AS1
STRING (EMBL)HEXA-AS1
ZODIACHEXA-AS1
Ontologies - Pathways
QuickGOQ9H8Q6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkHEXA-AS1
Atlas of Cancer Signalling NetworkHEXA-AS1
Wikipedia pathwaysHEXA-AS1
Orthology - Evolution
OrthoDB80072
GeneTree (enSembl)ENSG00000260339
Phylogenetic Trees/Animal Genes : TreeFamHEXA-AS1
HOVERGENQ9H8Q6
HOGENOMQ9H8Q6
Homologs : HomoloGeneHEXA-AS1
Homology/Alignments : Family Browser (UCSC)HEXA-AS1
Gene fusions - Rearrangements
Tumor Fusion PortalHEXA-AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHEXA-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HEXA-AS1
dbVarHEXA-AS1
ClinVarHEXA-AS1
1000_GenomesHEXA-AS1 
Exome Variant ServerHEXA-AS1
ExAC (Exome Aggregation Consortium)ENSG00000260339
GNOMAD BrowserENSG00000260339
Genetic variants : HAPMAP80072
Genomic Variants (DGV)HEXA-AS1 [DGVbeta]
DECIPHERHEXA-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHEXA-AS1 
Mutations
ICGC Data PortalHEXA-AS1 
TCGA Data PortalHEXA-AS1 
Broad Tumor PortalHEXA-AS1
OASIS PortalHEXA-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHEXA-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HEXA-AS1
DgiDB (Drug Gene Interaction Database)HEXA-AS1
DoCM (Curated mutations)HEXA-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HEXA-AS1 (select a term)
intoGenHEXA-AS1
Cancer3DHEXA-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHEXA-AS1
MedgenHEXA-AS1
Genetic Testing Registry HEXA-AS1
NextProtQ9H8Q6 [Medical]
TSGene80072
GENETestsHEXA-AS1
Target ValidationHEXA-AS1
Huge Navigator HEXA-AS1 [HugePedia]
snp3D : Map Gene to Disease80072
BioCentury BCIQHEXA-AS1
ClinGenHEXA-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80072
Chemical/Pharm GKB GenePA142672270
Clinical trialHEXA-AS1
Miscellaneous
canSAR (ICR)HEXA-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHEXA-AS1
EVEXHEXA-AS1
GoPubMedHEXA-AS1
iHOPHEXA-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:31:23 CET 2017

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