Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HGH1 (HGH1 homolog)

Identity

Alias_namesC8orf30A
FAM203B
C8orf30B
FAM203A
chromosome 8 open reading frame 30A
family with sequence similarity 203, member B
chromosome 8 open reading frame 30B
family with sequence similarity 203, member A
HGH1 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ40907
LOC51236
Brp16
Other aliasBRP16
BRP16L
HGNC (Hugo) HGH1
LocusID (NCBI) 51236
Atlas_Id 64253
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144137769 and ends at 144140843 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HGH1   24161
Cards
Entrez_Gene (NCBI)HGH1  51236  HGH1 homolog
AliasesBRP16; BRP16L; C8orf30A; C8orf30B; 
FAM203A; FAM203B
GeneCards (Weizmann)HGH1
Ensembl hg19 (Hinxton)ENSG00000235173 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235173 [Gene_View]  chr8:144137769-144140843 [Contig_View]  HGH1 [Vega]
ICGC DataPortalENSG00000235173
TCGA cBioPortalHGH1
AceView (NCBI)HGH1
Genatlas (Paris)HGH1
WikiGenes51236
SOURCE (Princeton)HGH1
Genetics Home Reference (NIH)HGH1
Genomic and cartography
GoldenPath hg38 (UCSC)HGH1  -     chr8:144137769-144140843 +  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HGH1  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblHGH1 - 8q24.3 [CytoView hg19]  HGH1 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIHGH1 [Mapview hg19]  HGH1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151022 AK098226 AW002157 BC003035 BC009915
RefSeq transcript (Entrez)NM_016458
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HGH1
Cluster EST : UnigeneHs.300224 [ NCBI ]
CGAP (NCI)Hs.300224
Alternative Splicing GalleryENSG00000235173
Gene ExpressionHGH1 [ NCBI-GEO ]   HGH1 [ EBI - ARRAY_EXPRESS ]   HGH1 [ SEEK ]   HGH1 [ MEM ]
Gene Expression Viewer (FireBrowse)HGH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51236
GTEX Portal (Tissue expression)HGH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTY7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTY7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTY7
Splice isoforms : SwissVarQ9BTY7
PhosPhoSitePlusQ9BTY7
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Protein_HGH1_C    Protein_HGH1_N   
Domain families : Pfam (Sanger)DUF383 (PF04063)    DUF384 (PF04064)   
Domain families : Pfam (NCBI)pfam04063    pfam04064   
Conserved Domain (NCBI)HGH1
DMDM Disease mutations51236
Blocks (Seattle)HGH1
SuperfamilyQ9BTY7
Human Protein AtlasENSG00000235173
Peptide AtlasQ9BTY7
HPRD17423
IPIIPI00009335   IPI01008983   IPI00980138   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTY7
IntAct (EBI)Q9BTY7
FunCoupENSG00000235173
BioGRIDHGH1
STRING (EMBL)HGH1
ZODIACHGH1
Ontologies - Pathways
QuickGOQ9BTY7
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkHGH1
Atlas of Cancer Signalling NetworkHGH1
Wikipedia pathwaysHGH1
Orthology - Evolution
OrthoDB51236
GeneTree (enSembl)ENSG00000235173
Phylogenetic Trees/Animal Genes : TreeFamHGH1
HOVERGENQ9BTY7
HOGENOMQ9BTY7
Homologs : HomoloGeneHGH1
Homology/Alignments : Family Browser (UCSC)HGH1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHGH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HGH1
dbVarHGH1
ClinVarHGH1
1000_GenomesHGH1 
Exome Variant ServerHGH1
ExAC (Exome Aggregation Consortium)HGH1 (select the gene name)
Genetic variants : HAPMAP51236
Genomic Variants (DGV)HGH1 [DGVbeta]
DECIPHERHGH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHGH1 
Mutations
ICGC Data PortalHGH1 
TCGA Data PortalHGH1 
Broad Tumor PortalHGH1
OASIS PortalHGH1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHGH1
BioMutasearch HGH1
DgiDB (Drug Gene Interaction Database)HGH1
DoCM (Curated mutations)HGH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HGH1 (select a term)
intoGenHGH1
Cancer3DHGH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHGH1
Genetic Testing Registry HGH1
NextProtQ9BTY7 [Medical]
TSGene51236
GENETestsHGH1
Target ValidationHGH1
Huge Navigator HGH1 [HugePedia]
snp3D : Map Gene to Disease51236
BioCentury BCIQHGH1
ClinGenHGH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51236
Chemical/Pharm GKB GenePA142672348
Clinical trialHGH1
Miscellaneous
canSAR (ICR)HGH1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHGH1
EVEXHGH1
GoPubMedHGH1
iHOPHGH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:52:15 CEST 2017

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