Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HHATL-AS1 (HHATL antisense RNA 1)

Identity

Alias_namesHHATL antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) HHATL-AS1
LocusID (NCBI) 100874044
Atlas_Id 79997
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42702541 and ends at 42706765 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)HHATL-AS1   42439
Cards
Entrez_Gene (NCBI)HHATL-AS1  100874044  HHATL antisense RNA 1
Aliases
GeneCards (Weizmann)HHATL-AS1
Ensembl hg19 (Hinxton)ENSG00000230970 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230970 [Gene_View]  chr3:42702541-42706765 [Contig_View]  HHATL-AS1 [Vega]
ICGC DataPortalENSG00000230970
TCGA cBioPortalHHATL-AS1
AceView (NCBI)HHATL-AS1
Genatlas (Paris)HHATL-AS1
WikiGenes100874044
SOURCE (Princeton)HHATL-AS1
Genetics Home Reference (NIH)HHATL-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)HHATL-AS1  -     chr3:42702541-42706765 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HHATL-AS1  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblHHATL-AS1 - 3p22.1 [CytoView hg19]  HHATL-AS1 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBIHHATL-AS1 [Mapview hg19]  HHATL-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA134497
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HHATL-AS1
Cluster EST : UnigeneHs.572966 [ NCBI ]
CGAP (NCI)Hs.572966
Alternative Splicing GalleryENSG00000230970
Gene ExpressionHHATL-AS1 [ NCBI-GEO ]   HHATL-AS1 [ EBI - ARRAY_EXPRESS ]   HHATL-AS1 [ SEEK ]   HHATL-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)HHATL-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874044
GTEX Portal (Tissue expression)HHATL-AS1
Human Protein AtlasENSG00000230970-HHATL-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HHATL-AS1
DMDM Disease mutations100874044
Blocks (Seattle)HHATL-AS1
Human Protein Atlas [tissue]ENSG00000230970-HHATL-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000230970
BioGRIDHHATL-AS1
STRING (EMBL)HHATL-AS1
ZODIACHHATL-AS1
Ontologies - Pathways
Huge Navigator HHATL-AS1 [HugePedia]
snp3D : Map Gene to Disease100874044
BioCentury BCIQHHATL-AS1
ClinGenHHATL-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874044
Clinical trialHHATL-AS1
Miscellaneous
canSAR (ICR)HHATL-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHHATL-AS1
EVEXHHATL-AS1
GoPubMedHHATL-AS1
iHOPHHATL-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:07:37 CET 2017

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