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HHIPL2 (HHIP-like 2)

Identity

Alias_namesKIAA1822L
KIAA1822-like
HHIP-like 2
Alias_symbol (synonym)FLJ13840
Other alias
HGNC (Hugo) HHIPL2
LocusID (NCBI) 79802
Atlas_Id 64256
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 222695602 and ends at 222721444 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HHIPL2 (1q41) / NR1H2 (19q13.33)HHIPL2 (1q41) / TLR5 (1q41)SLC30A7 (1p21.2) / HHIPL2 (1q41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HHIPL2   25842
Cards
Entrez_Gene (NCBI)HHIPL2  79802  HHIP-like 2
AliasesKIAA1822L
GeneCards (Weizmann)HHIPL2
Ensembl hg19 (Hinxton)ENSG00000143512 [Gene_View]  chr1:222695602-222721444 [Contig_View]  HHIPL2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143512 [Gene_View]  chr1:222695602-222721444 [Contig_View]  HHIPL2 [Vega]
ICGC DataPortalENSG00000143512
TCGA cBioPortalHHIPL2
AceView (NCBI)HHIPL2
Genatlas (Paris)HHIPL2
WikiGenes79802
SOURCE (Princeton)HHIPL2
Genetics Home Reference (NIH)HHIPL2
Genomic and cartography
GoldenPath hg19 (UCSC)HHIPL2  -     chr1:222695602-222721444 -  1q41   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HHIPL2  -     1q41   [Description]    (hg38-Dec_2013)
EnsemblHHIPL2 - 1q41 [CytoView hg19]  HHIPL2 - 1q41 [CytoView hg38]
Mapping of homologs : NCBIHHIPL2 [Mapview hg19]  HHIPL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023902 AY358602 BC007638 BC015167 BC015201
RefSeq transcript (Entrez)NM_024746
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929294
Consensus coding sequences : CCDS (NCBI)HHIPL2
Cluster EST : UnigeneHs.665660 [ NCBI ]
CGAP (NCI)Hs.665660
Alternative Splicing GalleryENSG00000143512
Gene ExpressionHHIPL2 [ NCBI-GEO ]   HHIPL2 [ EBI - ARRAY_EXPRESS ]   HHIPL2 [ SEEK ]   HHIPL2 [ MEM ]
Gene Expression Viewer (FireBrowse)HHIPL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79802
GTEX Portal (Tissue expression)HHIPL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWX4
Splice isoforms : SwissVarQ6UWX4
PhosPhoSitePlusQ6UWX4
Domains : Interpro (EBI)6-blade_b-propeller_TolB-like    Folate_rcpt-like    Glc/Sorbosone_DH    Quinoprot_gluc/sorb_DH   
Domain families : Pfam (Sanger)Folate_rec (PF03024)    GSDH (PF07995)   
Domain families : Pfam (NCBI)pfam03024    pfam07995   
Conserved Domain (NCBI)HHIPL2
DMDM Disease mutations79802
Blocks (Seattle)HHIPL2
SuperfamilyQ6UWX4
Human Protein AtlasENSG00000143512
Peptide AtlasQ6UWX4
HPRD08587
IPIIPI00015504   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWX4
IntAct (EBI)Q6UWX4
FunCoupENSG00000143512
BioGRIDHHIPL2
STRING (EMBL)HHIPL2
ZODIACHHIPL2
Ontologies - Pathways
QuickGOQ6UWX4
Ontology : AmiGOprotein binding  extracellular region  carbohydrate metabolic process  oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor  quinone binding  oxidation-reduction process  
Ontology : EGO-EBIprotein binding  extracellular region  carbohydrate metabolic process  oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor  quinone binding  oxidation-reduction process  
NDEx NetworkHHIPL2
Atlas of Cancer Signalling NetworkHHIPL2
Wikipedia pathwaysHHIPL2
Orthology - Evolution
OrthoDB79802
GeneTree (enSembl)ENSG00000143512
Phylogenetic Trees/Animal Genes : TreeFamHHIPL2
HOVERGENQ6UWX4
HOGENOMQ6UWX4
Homologs : HomoloGeneHHIPL2
Homology/Alignments : Family Browser (UCSC)HHIPL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHHIPL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HHIPL2
dbVarHHIPL2
ClinVarHHIPL2
1000_GenomesHHIPL2 
Exome Variant ServerHHIPL2
ExAC (Exome Aggregation Consortium)HHIPL2 (select the gene name)
Genetic variants : HAPMAP79802
Genomic Variants (DGV)HHIPL2 [DGVbeta]
DECIPHER (Syndromes)1:222695602-222721444  ENSG00000143512
CONAN: Copy Number AnalysisHHIPL2 
Mutations
ICGC Data PortalHHIPL2 
TCGA Data PortalHHIPL2 
Broad Tumor PortalHHIPL2
OASIS PortalHHIPL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHHIPL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHHIPL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HHIPL2
DgiDB (Drug Gene Interaction Database)HHIPL2
DoCM (Curated mutations)HHIPL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HHIPL2 (select a term)
intoGenHHIPL2
Cancer3DHHIPL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHHIPL2
Genetic Testing Registry HHIPL2
NextProtQ6UWX4 [Medical]
TSGene79802
GENETestsHHIPL2
Huge Navigator HHIPL2 [HugePedia]
snp3D : Map Gene to Disease79802
BioCentury BCIQHHIPL2
ClinGenHHIPL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79802
Chemical/Pharm GKB GenePA162390914
Clinical trialHHIPL2
Miscellaneous
canSAR (ICR)HHIPL2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHHIPL2
EVEXHHIPL2
GoPubMedHHIPL2
iHOPHHIPL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:41 CET 2017

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