Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HHLA1 (HERV-H LTR-associating 1)

Identity

Other namesPLA2L
HGNC (Hugo) HHLA1
LocusID (NCBI) 10086
Location 8q24.22
Location_base_pair Starts at 133073733 and ends at 133117512 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HHLA1   4904
Cards
Entrez_Gene (NCBI)HHLA1  10086  HERV-H LTR-associating 1
GeneCards (Weizmann)HHLA1
Ensembl (Hinxton)ENSG00000132297 [Gene_View]  chr8:133073733-133117512 [Contig_View]  HHLA1 [Vega]
AceView (NCBI)HHLA1
Genatlas (Paris)HHLA1
WikiGenes10086
SOURCE (Princeton)NM_001145095 NM_005712
Genomic and cartography
GoldenPath (UCSC)HHLA1  -  8q24.22   chr8:133073733-133117512 -  8q24.22   [Description]    (hg19-Feb_2009)
EnsemblHHLA1 - 8q24.22 [CytoView]
Mapping of homologs : NCBIHHLA1 [Mapview]
OMIM604109   
Gene and transcription
Genbank (Entrez)AK022619
RefSeq transcript (Entrez)NM_001145095 NM_005712
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NT_008046 NW_001839138 NW_004929340
Consensus coding sequences : CCDS (NCBI)HHLA1
Cluster EST : UnigeneHs.285026 [ NCBI ]
CGAP (NCI)Hs.285026
Alternative Splicing : Fast-db (Paris)GSHG0029868
Alternative Splicing GalleryENSG00000132297
Gene ExpressionHHLA1 [ NCBI-GEO ]     HHLA1 [ SEEK ]   HHLA1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JL84 (Uniprot)
NextProtC9JL84  [Medical]
With graphics : InterProC9JL84
Splice isoforms : SwissVarC9JL84 (Swissvar)
Related proteins : CluSTrC9JL84
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations10086
Blocks (Seattle)C9JL84
Human Protein AtlasENSG00000132297
Peptide AtlasC9JL84
HPRD06823
IPIIPI00793585   IPI00024700   
Protein Interaction databases
DIP (DOE-UCLA)C9JL84
IntAct (EBI)C9JL84
FunCoupENSG00000132297
BioGRIDHHLA1
InParanoidC9JL84
Interologous Interaction database C9JL84
IntegromeDBHHLA1
STRING (EMBL)HHLA1
Ontologies - Pathways
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
REACTOMEHHLA1
Protein Interaction DatabaseHHLA1
Wikipedia pathwaysHHLA1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HHLA1
SNP (GeneSNP Utah)HHLA1
SNP : HGBaseHHLA1
Genetic variants : HAPMAPHHLA1
1000_GenomesHHLA1 
ICGC programENSG00000132297 
Somatic Mutations in Cancer : COSMICHHLA1 
CONAN: Copy Number AnalysisHHLA1 
Mutations and Diseases : HGMDHHLA1
OMIM604109   
GENETestsHHLA1
Disease Genetic AssociationHHLA1
Huge Navigator HHLA1 [HugePedia]  HHLA1 [HugeCancerGEM]
Genomic VariantsHHLA1  HHLA1 [DGVbeta]
Exome VariantHHLA1
dbVarHHLA1
ClinVarHHLA1
snp3D : Map Gene to Disease10086
General knowledge
Homologs : HomoloGeneHHLA1
Homology/Alignments : Family Browser (UCSC)HHLA1
Phylogenetic Trees/Animal Genes : TreeFamHHLA1
Chemical/Protein Interactions : CTD10086
Chemical/Pharm GKB GenePA29277
Clinical trialHHLA1
Cancer Resource (Charite)ENSG00000132297
Other databases
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
CoreMineHHLA1
iHOPHHLA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 16:57:08 CEST 2014

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