Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HIAT1 (hippocampus abundant transcript 1)

Identity

Other alias-
HGNC (Hugo) HIAT1
LocusID (NCBI) 64645
Atlas_Id 64259
Location 1p21.2  [Link to chromosome band 1p21]
Location_base_pair Starts at 100503789 and ends at 100548929 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIAT1   23363
Cards
Entrez_Gene (NCBI)HIAT1  64645  hippocampus abundant transcript 1
Aliases
GeneCards (Weizmann)HIAT1
Ensembl hg19 (Hinxton)ENSG00000156875 [Gene_View]  chr1:100503789-100548929 [Contig_View]  HIAT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156875 [Gene_View]  chr1:100503789-100548929 [Contig_View]  HIAT1 [Vega]
ICGC DataPortalENSG00000156875
TCGA cBioPortalHIAT1
AceView (NCBI)HIAT1
Genatlas (Paris)HIAT1
WikiGenes64645
SOURCE (Princeton)HIAT1
Genetics Home Reference (NIH)HIAT1
Genomic and cartography
GoldenPath hg19 (UCSC)HIAT1  -     chr1:100503789-100548929 +  1p21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HIAT1  -     1p21.2   [Description]    (hg38-Dec_2013)
EnsemblHIAT1 - 1p21.2 [CytoView hg19]  HIAT1 - 1p21.2 [CytoView hg38]
Mapping of homologs : NCBIHIAT1 [Mapview hg19]  HIAT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF427492 AK057172 AK075208 AK096669 AK127671
RefSeq transcript (Entrez)NM_033055
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)HIAT1
Cluster EST : UnigeneHs.124156 [ NCBI ]
CGAP (NCI)Hs.124156
Alternative Splicing GalleryENSG00000156875
Gene ExpressionHIAT1 [ NCBI-GEO ]   HIAT1 [ EBI - ARRAY_EXPRESS ]   HIAT1 [ SEEK ]   HIAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)HIAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64645
GTEX Portal (Tissue expression)HIAT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MC6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MC6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MC6
Splice isoforms : SwissVarQ96MC6
PhosPhoSitePlusQ96MC6
Domaine pattern : Prosite (Expaxy)MFS (PS50850)    SUGAR_TRANSPORT_1 (PS00216)   
Domains : Interpro (EBI)MFS    MFS_dom    Sugar_transporter_CS    Tet-R_TetA/multi-R_MdtG   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)HIAT1
DMDM Disease mutations64645
Blocks (Seattle)HIAT1
SuperfamilyQ96MC6
Human Protein AtlasENSG00000156875
Peptide AtlasQ96MC6
HPRD11022
IPIIPI00307656   IPI00647550   
Protein Interaction databases
DIP (DOE-UCLA)Q96MC6
IntAct (EBI)Q96MC6
FunCoupENSG00000156875
BioGRIDHIAT1
STRING (EMBL)HIAT1
ZODIACHIAT1
Ontologies - Pathways
QuickGOQ96MC6
Ontology : AmiGOtransporter activity  integral component of membrane  transmembrane transport  
Ontology : EGO-EBItransporter activity  integral component of membrane  transmembrane transport  
NDEx NetworkHIAT1
Atlas of Cancer Signalling NetworkHIAT1
Wikipedia pathwaysHIAT1
Orthology - Evolution
OrthoDB64645
GeneTree (enSembl)ENSG00000156875
Phylogenetic Trees/Animal Genes : TreeFamHIAT1
HOVERGENQ96MC6
HOGENOMQ96MC6
Homologs : HomoloGeneHIAT1
Homology/Alignments : Family Browser (UCSC)HIAT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIAT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIAT1
dbVarHIAT1
ClinVarHIAT1
1000_GenomesHIAT1 
Exome Variant ServerHIAT1
ExAC (Exome Aggregation Consortium)HIAT1 (select the gene name)
Genetic variants : HAPMAP64645
Genomic Variants (DGV)HIAT1 [DGVbeta]
DECIPHER (Syndromes)1:100503789-100548929  ENSG00000156875
CONAN: Copy Number AnalysisHIAT1 
Mutations
ICGC Data PortalHIAT1 
TCGA Data PortalHIAT1 
Broad Tumor PortalHIAT1
OASIS PortalHIAT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIAT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIAT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIAT1
DgiDB (Drug Gene Interaction Database)HIAT1
DoCM (Curated mutations)HIAT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIAT1 (select a term)
intoGenHIAT1
Cancer3DHIAT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHIAT1
Genetic Testing Registry HIAT1
NextProtQ96MC6 [Medical]
TSGene64645
GENETestsHIAT1
Huge Navigator HIAT1 [HugePedia]
snp3D : Map Gene to Disease64645
BioCentury BCIQHIAT1
ClinGenHIAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64645
Chemical/Pharm GKB GenePA134910737
Clinical trialHIAT1
Miscellaneous
canSAR (ICR)HIAT1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIAT1
EVEXHIAT1
GoPubMedHIAT1
iHOPHIAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:41 CET 2017

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